TCONS_00042683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042683
Unique NameTCONS_00042683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042683 ID=TCONS_00042683|Name=TCONS_00042683|organism=Clytia hemisphaerica|type=transcript|length=1777bp
AAAATAAAAAGTAGCAGCTTGAAAAGAAGCCGTGAAAAACGAATGTAATA
TCTTAGGAAAATAATTCAACTCAACAAACGTCTTGGGATTTTACTTCGAT
AAAGTTCTGAACATTGCTTAAATTCCGAGACTTTTTGTTACAGCAAATCT
TTTTGCTGGATTGTCTTTAATATAGCGGTTTCTACTTTGCTGGGACTTCC
ATCTACCGTGCTTTGATATCATACGATCTGAAACGTTATTGTTAGCTGCC
TCGGAGGCTCCACCAGACCTTAGAGAGTGTAAAGCGTAGTGCTTCTCATT
GACTAAAGATGATAAGTGGCTTTTAAAAAGGGTCCACACTGTAGAATAAG
AAATACTATATTTGCCAATAGCGTTATgcccaatttttgtttttgctaaa
cGACAGactaaaaaagattctttttcggATTCCAGGTTTGAAAATGAAAG
GTAACGTCTAAGCCAATATACTGGACAACATTCGGTGTCTGTTTTTGAAA
CGTATATGATATGTCCTTCCCGAAGTTGATCAGTCTTTGATATTTCTATG
AAAAGTTTTAGACCTTCCTCCACAAAAGTAATGTCCTTAATCTTCAAAGC
TAGAATCTCACTTATTCTCATGAAGCCTGAAAAGCCGAGAACACAAATTA
ACACGAACCGAAGATCCATTAAATTATCGGACGCTCCGTACTCTTTAACA
ATTTTGTGAAGAAGCTCGGTGTTGAGGGGTTCTTTTTGATTAGATGTCTT
CCCACCATCCCTCGTGATTNGTGTTGAGGGGTTCTTTTTGATTAGATGTC
TTCCCACCGTCCCTCGTGATTACTCTTTTCCCACCTTCGAGAGCTAATTT
AACGATTGGGTTATCTGTAGGTGTTTCTAAACCAGCACTCAAGTGTCCCC
ACCTAATGCCTAACAACGCTGCGTCTAGGGTCCCTATTTTACCGTCGTTA
GAGACAATGTCGTTTAGATAAATTGCGATAAAGAAAGGGTCAGCGGGACA
AGGTAAGACTTCGTCGAATTGGGATGCccaaaaaatccattttttccatG
CAGACCTGTATTTTTGGAGAGTAGATTTTGCGTAAGCTGATGAAACCAAG
TTTGGTAATGAGGAAGCGATGCCTTTAAGCTTGCTATCCTTGATGTCGTC
AAGCCTTGACCAGATTCCGAACATGAGGGATTCTGAAtggattgagaaaa
aaaaggggGGTAAGTAAATCTCTCCTacctgttgtttttttttgacagtC
CACTGACTCCATCAGTAATCTCGAATTTTAATGCCTCGCTGTGCTCATCT
GACACCAACGGGCTGACAATTTGTCAGTGTGGAAAGGGTCTTAAATTATA
TCGAGAAAACACCAGCTGAAGATGAGAGCAATAACAATATGAATGACGAA
TTTTGGCCTCCACACGGCGCTGTTTGCTTCCGAAACGTGTGTTTACAAta
cagAGAGAATCTTCCATTTGCTTTGGAAGAAGTCTCATTCTTTGTCAAAG
CCGGCGAAAAGGTTGGTATCTGTGGACGAACGGGGTCTGGGAAAAGCAGT
TTGTTTCGTCTACTGTTTAAAATCTTGGATGTGACCAGGGGAGAAATTAT
CATCGATGGAATGAACCTTTCAAACATCTCCATCTCACAAACAAGATCGA
AGATGGCAATCATCCCACAGGATCCGTTTTTATTTGATGACACCATCTTA
CAAAATCTTGACCCACAAGGAAAATATGCTGCTTTTGAAATCGACGATGT
TATTCAGAAATGTCATCTAACAAAACT
Run BLAST on NCBI

transcript from alignment at sc0003604:1028..4395+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042683 ID=TCONS_00042683|Name=TCONS_00042683|organism=Clytia hemisphaerica|type=transcript|length=3368bp|location=Sequence derived from alignment at sc0003604:1028..4395+ (Clytia hemisphaerica)
AAAATAAAAAGTAGCAGCTTGAAAAGAAGCCGTGAAAAACGAATGTAATA
TCTTAGGAAAATAATTCAACTCAACAAACGTCTTGGGATTTTACTTCGAT
AAAGTTCTGAACATTGCTTAAATTCCGAGACTTTTTGTTACAGCAAATCT
TTTTGCTGGATTGTCTTTAATATAGCGGTTTCTACTTTGCTGGGACTTCC
ATCTACCGTGCTTTGATATCATACGATCTGAAACGTTATTGTTAGCTGCC
TCGGAGGCTCCACCAGACCTTAGAGAGTGTAAAGCGTAGTGCTTCTCATT
GACTAAAGATGATAAGTGGCTTTTAAAAAGGGTCCACACTGTAGAATAAG
AAATACTATATTTGCCAATAGCGTTATgcccaatttttgtttttgctaaa
cGACAGactaaaaaagattctttttcggATTCCAGGTTTGAAAATGAAAG
GTAACGTCTAAGCCAATATACTGGACAACATTCGGTGTCTGTTTTTGAAA
CGTATATGATATGTCCTTCCCGAAGTTGATCAGTCTTTGATATTTCTATG
AAAAGTTTTAGACCTTCCTCCACAAAAGTAATGTCCTTAATCTTCAAAGC
TAGAATCTCACTTATTCTCATGAAGCCTGAAAAGCCGAGAACACAAATTA
ACACGAACCGAAGATCCATTAAATTATCGGACGCTCCGTACTCTTTAACA
ATTTTGTGAAGAAGCTCGGTGTTGAGGGGTTCTTTTTGATTAGATGTCTT
CCCACCATCCCTCGTGATTNGTGTTGAGGGGTTCTTTTTGATTAGATGTC
TTCCCACCGTCCCTCGTGATTACTCTTTTCCCACCTTCGAGAGCTAATTT
AACGATTGGGTTATCTGTAGGTGTTTCTAAACCAGCACTCAAGTGTCCCC
ACCTAATGCCTAACAACGCTGCGTCTAGGGTCCCTATTTTACCGTCGTTA
GAGACAATGTCGTTTAGATAAATTGCGATAAAGAAAGGGTCAGCGGGACA
AGGTAAGACTTCGTCGAATTGGGATGCccaaaaaatccattttttccatG
CAGACCTGTATTTTTGGAGAGTAGATTTTGCGTAAGCTGATGAAACCAAG
TTTGGTAATGAGGAAGCGATGCCTTTAAGCTTGCTATCCTTGATGTCGTC
AAGCCTTGACCAGATTCCGAACATGAGGGATTCTGAAtggattgagaaaa
aaaaggggGGTAAGTAAATCTCTCCTacctgttgtttttttttgacagtC
CACTGACTCCATCAGTAATCTCGAATTTTAATGCCTCGCTGTGCTCATCT
GACACCAACGGGCTGACAATTTGTCAGTGTGGAAAGGGTCTTAAATTATA
TCGAGAAAACACCAGCTGAAGATGAGAGCAATAACAATGtaagacttttt
tttaaatatgagaCAGTCACAAACAAGCCACGGATGAACAAGCCGACGAA
AAACGCCTAttcgtgatatgcaccattgcaatgtcttctgatattaCATC
ACGGGCCAAActgctgattggttgtaagtgacgtaaaatctgTTAATaca
tcaattttgaccaatcagctgttgggttcgtggaagacattgcaatggtg
catgtCATGAATAGGAAAGTAAATCTTGCTGAGATAGAGAACCCCTGGAT
CTGTCAAGACTCGTTCGGTGCTTCGTGATTTTCGATATAGACCGTTTAGC
ACGTTTGGTTGTCATTGCTAGTTCATGGGGTTTTTGACGCTAAAATTCGT
AAAATGCAGCCCAAATAGGACTcccttttgaaatttatttgtgGAAAATG
CAGCCAACATAGGACAAAATCcgtaaattttctttaaattttcatgTTCC
TGTTTTCACCAAATAAGGCACACTGTGGAGGACTGAATTTTTCAAGAGAC
TGACGGTGGTGATAAAAGATACCCTTTCCTTTGGCTCAAACCAGTCCCAC
CCACCCCGACTTGGAGAAGACATTTATTGATGTATtattcttgtttttct
ttttgacgcACAGATGAATGACGAATTTTGGCCTCCACACGGCGCTGTTT
GCTTCCGAAACGTGTGTTTACAAtacaggtttgaaaaatcttctcttttt
caatttgttttctttgagcTGACGATTGTATGAAAATTGGTACTCGGGAA
TTGGATTGGTACTCCTTTGGATCCTTCACTGCAAGTTAACTATGTTTGTT
TGTTAACGAATTTACAACTTGAATCATGAATTCTTCTTTTGCATGAAGCA
AAAGAAATCTGAAGAAATCTACTCTAGCAACTTGTAGGAAGTTGTGGAAA
CTTGTGGAAGTTTTGAAAAACAGTGtttattaaaggtttttttcataagt
gttcctgttttatatcagacacaCATTTCATATCAGGGCAGTGTCAGTTA
TATTGtgatgatataagcaaaaaaatgtttttcttttcctctttctaacc
aaccttgctccacacccgtgtcaattcaataccAAAAAGcctgtaaatta
aaattgatgagtaagcaaacgatatgactcttattcaaaaacaaaaactt
taaagTGGGATCTTCTGCAGATAACTTCAAGAATATTATAACATTACTTT
TTCTGTATTTGaacactttttttgttttctcatCATCTTTCAGAGAGAAT
CTTCCATTTGCTTTGGAAGAAGTCTCATTCTTTGTCAAAGCCGGCGAAAA
GGTTTGTAGAGTTTTGATGATATAAGCATTTGTGATTAGACTATATGCCA
GCAGCCTACAGATAATTTTTACCGTATTTTTGTACACAGCTTTTCTTAGT
TTCTTCGCTTTTTAAAATCGCATCACAATCAGGTTTCATTTATCTTCATA
GGTTGGTATCTGTGGACGAACGGGGTCTGGGAAAAGCAGTTTGTTTCGTC
TACTGTTTAAAATCTTGGATGTGACCAGGGGAGAAATTATCATCGATGGA
ATGAACCTTTCAAACATCTCCATCTCACAAACAAGGTATTGTTTGATCTC
TTTCTCCTGTGCTTTGTACAACGAGTCCAACCTCAATGCTGCAAAGAGTA
AAGGAAGAGTATTAGACAACCTCAACTGCTTCTTGACCTTTgggatttag
aaaaattcaaagaattacATGGTGTTGATGTATGGTAGATGCTGGTAGAT
TACTTTTCAATCTTGTTATCCCCTTGGCATTCCCATTGTCCTTTCTGGAG
AATTTATTTGAAGGGGTAATCGTTTCTTGTTCATAGATCGAAGATGGCAA
TCATCCCACAGGATCCGTTTTTATTTGATGACACCATCTTACAAAATCTT
GACCCACAAGGAAAATATGCTGCTTTTGAAATCGACGATGTTATTCAGAA
ATGTCATCTAACAAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026496XLOC_026496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042683-exon-sc0003604-1491911889:1028..2415TCONS_00042683-exon-sc0003604-1491911889:1028..2415Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1510915933:1028..2415TCONS_00042683-exon-sc0003604-1510915933:1028..2415Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1575043694:1028..2415TCONS_00042683-exon-sc0003604-1575043694:1028..2415Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1491911889:3041..3105TCONS_00042683-exon-sc0003604-1491911889:3041..3105Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1510915933:3041..3105TCONS_00042683-exon-sc0003604-1510915933:3041..3105Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1575043694:3041..3105TCONS_00042683-exon-sc0003604-1575043694:3041..3105Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1491911889:3671..3728TCONS_00042683-exon-sc0003604-1491911889:3671..3728Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1510915933:3671..3728TCONS_00042683-exon-sc0003604-1510915933:3671..3728Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1575043694:3671..3728TCONS_00042683-exon-sc0003604-1575043694:3671..3728Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1491911889:3879..4012TCONS_00042683-exon-sc0003604-1491911889:3879..4012Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1510915933:3879..4012TCONS_00042683-exon-sc0003604-1510915933:3879..4012Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1575043694:3879..4012TCONS_00042683-exon-sc0003604-1575043694:3879..4012Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1491911889:4264..4395TCONS_00042683-exon-sc0003604-1491911889:4264..4395Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1510915933:4264..4395TCONS_00042683-exon-sc0003604-1510915933:4264..4395Clytia hemisphaericaexon
TCONS_00042683-exon-sc0003604-1575043694:4264..4395TCONS_00042683-exon-sc0003604-1575043694:4264..4395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003604supercontigsc0003604:1028..4395 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.21362	4.59643	1.76884	1.41045	1.31875	1.17052	0.800418	1.17357	0.684768	0.940324	0.465475	0.255438	0.177038	0.273046	0.577565	0.451616	0.611117	0.833212	0.902329	0.579042	1.12536	1.35593	3.66302	2.7467	1.50915	1.11453	0.34512	0.53799	3.39438	2.8616
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
IPR002104Integrase_catalytic
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
[Close]
BLAST of TCONS_00042683 vs. Swiss-Prot (Human)
Match: MRP5 (Multidrug resistance-associated protein 5 OS=Homo sapiens GN=ABCC5 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.487e-34
Identity = 68/153 (44.44%), Postives = 100/153 (65.36%), Query Frame = 3 
Query: 1317 QFVSVERVLNYIEKTPAEDES--NNNMNDEFWPPHGAVCFRNVCLQYRENLPFALEEVSFFVKAGEKVGICGRTGSGKSSLFRLLFKILDVTRGEIIIDGMNLSNISISQTRSKMAIIPQDPFLFDDTILQNLDPQGKYAAFEIDDVIQKCHL 1769
            +F SVER+ +YI+    E  +   N      WP  G V F N  ++YRENLP  L++VSF +K  EK+GI GRTGSGKSSL   LF++++++ G I IDG+ +S+I ++  RSK++IIPQ+P LF  T+  NLDP  +Y   +I D +++ H+
Sbjct: 1156 RFTSVERINHYIKTLSLEAPARIKNKAPSPDWPQEGEVTFENAEMRYRENLPLVLKKVSFTIKPKEKIGIVGRTGSGKSSLGMALFRLVELSGGCIKIDGVRISDIGLADLRSKLSIIPQEPVLFSGTVRSNLDPFNQYTEDQIWDALERTHM 1308
The following BLAST results are available for this feature:
BLAST of TCONS_00042683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRP53.487e-3444.44Multidrug resistance-associated protein 5 OS=Homo ... [more]
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