TCONS_00042677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042677
Unique NameTCONS_00042677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042677 ID=TCONS_00042677|Name=TCONS_00042677|organism=Clytia hemisphaerica|type=transcript|length=703bp
CAGAAAAatactgaaagaaaaaacaacaacaacaagaacaATTTGATAGT
AAAACTTTGTGTTAAGGTTACCTTCATGTTATATTTGAGCTTGTATCTAC
TCAATTTGGTTCATCCATGTTTCACAGAAGGGACGGACAGATCTTGAAAG
AAGGTGTTCTTACGAAAAGAGCCATTGGTAAAAGTATCCTAACTGGACCA
ttaaatttcaaagaaagatgGGTTGTTTTAACAGAAAAAGCTTTGACATA
CAATGAAATATCTGATGAGGGTAAAGGCAAAGAGAAAGGAACACTTGATA
CAGGAAATATCAAAGgaattgaagaagttgattatGAAGCATTTGGTAAA
AACTCTGCATTTCAGGTGATCTTTGAGGACTTCATCTTGTATTTGATTGC
CTCTAAAGACGATGGGAGAAACGACTGGATTTCAAATCTAAGAGATGCAA
TATCAAACAAAGACAACTCACTCTACGAGAAATATCATTCAGGTGTTTTC
ATAAACAACCAATGGACTTGTTGTAAGTCACAGGTGAAGAAAGAATCAGG
TTGTAAAGAAAGTTATTATTCTGGAAACAGTAAGTTAATTTGTGTTATCC
TATTACCTCAANTAAAGAAAGTTATTATTCTGGAAACAGTAAGTTAATTT
GTGTTATCCTATTACCTcaatttgatgattttcaagaaaaaaagctACTT
TCC
Run BLAST on NCBI

protein sequence of TCONS_00042677-protein

>TCONS_00042677-protein ID=TCONS_00042677-protein|Name=TCONS_00042677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MFHRRDGQILKEGVLTKRAIGKSILTGPLNFKERWVVLTEKALTYNEISD
EGKGKEKGTLDTGNIKGIEEVDYEAFGKNSAFQVIFEDFILYLIASKDDG
RNDWISNLRDAISNKDNSLYEKYHSGVFINNQWTCCKSQVKKESGCKESY
YSGNSKLICVILLPQXKKVIILETVS
Run BLAST on NCBI

transcript from alignment at sc0003592:6977..8365-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042677 ID=TCONS_00042677|Name=TCONS_00042677|organism=Clytia hemisphaerica|type=transcript|length=1389bp|location=Sequence derived from alignment at sc0003592:6977..8365- (Clytia hemisphaerica)
CAGAAAAATACTGAAAGAAAAAACAACAACAACAAGAACAATTTGATAGT
AAAACTTTGTGTTAAGGTTACCTTCATGTTATATTTGAGCTTGTATCTAC
TCAATTTGGTTCATCCATGTTTCACAGAAGGGACGGACAGATCTTGAAAG
AAGGTGTTCTTACGAAAAGAGCCATTGGTAAAAGTATCCTAACTGGACCA
TTAAATTTCAAAGAAAGATGGGTTGTTTTAACAGAAAAAGCTTTGACATA
CAATGAAATATCTGATGAGGTAAAAATTAGCGTTTTAGTAAACCTTTTTT
TTATTTGTGCAGAAGTTTAAGTTAATATTCTCACTTATTCAAAAACTATA
TTTTTGAGAGATTCATCATAAGTGCTTTATTTTCCTGCAGGGTAAAGGCA
AAGAGAAAGGAACACTTGATACAGGAAATATCAAAGGAATTGAAGAAGTT
GATTATGAAGCATTTGGTAAAAACTCTGCATTTCAGGTAATTTGTGTTTT
GAATTTTCCACCTTTTTTTAATAAATAAATCTTTGATTGACTTTTTGCAC
TCTATGCTATAACATTAGCATTACTTTATGATGCTACAATACTAAGAAAT
ACTTGAAAATGATTATTCACACTGAGTAAAGCCTGTACTTGTACTTCAAT
TAATTTAGCTGTCAAAATTTACGAAACAAATTAACTATACATGTCATTAT
TTTACATGCATGTGTGAAGAGTAAAATTAATCTGTGAGAATTATTCATTG
AACAGAAAAAACTATTATGGTCAAATCACTGTCCCAAGTTTTTTTGTGAG
TCACCCAGTAGTTTCTTTTCGTTGTAAAATAGCTGTCTTATTTTAAGGTG
ATCTTTGAGGACTTCATCTTGTATTTGATTGCCTCTAAAGACGATGGGAG
AAACGACTGGATTTCAAATCTAAGAGATGGTAGGATGATAAGTCAATTGA
TATTTTTCTTTCAATTTGAAAATTTATATTTTGTTTGTTTTCTATCTACA
TTTACCTAAAATAAAATGTTTCTTGCACAAAAGCTTTCAATGAATTTATT
TATCATCATACAGGCCAAAACGATATGATGTAATGTTTTTAATTTTTTCC
AAATTAATTCATATGATTGTTTCTTCACCATAGCAATATCAAACAAAGAC
AACTCACTCTACGAGAAATATCATTCAGGTGTTTTCATAAACAACCAATG
GACTTGTTGTAAGTCACAGGTGAAGAAAGAATCAGGTTGTAAAGAAAGTT
ATTATTCTGGAAACAGTAAGTTAATTTGTGTTATCCTATTACCTCAANTA
AAGAAAGTTATTATTCTGGAAACAGTAAGTTAATTTGTGTTATCCTATTA
CCTCAATTTGATGATTTTCAAGAAAAAAAGCTACTTTCC

Coding sequence (CDS) from alignment at sc0003592:6977..8365-

>TCONS_00042677 ID=TCONS_00042677|Name=TCONS_00042677|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at sc0003592:6977..8365- (Clytia hemisphaerica)
CAATATCAAACAAAGACAACTCACTCTACGAGAAATATCATTCAGGTGTT
TTCATAAACAACCAATGGACTTGTTGTAAGTCACAGGTGAAGAAAGAATC
AGGTTGTAAAGAAAGTTATTATTCTGGAAACAGTAAGTTAATTTGTGTTA
TCCTATTACCTCAANTAAAGAAAGTTATTATTCTGGAAACAGTAAGTTAA
GTGATCTTTGAGGACTTCATCTTGTATTTGATTGCCTCTAAAGACGATGG
GAGAAACGACTGGATTTCAAATCTAAGAGATGGGTAAAGGCAAAGAGAAA
GGAACACTTGATACAGGAAATATCAAAGGAATTGAAGAAGTTGATTATGA
AGCATTTGGTAAAAACTCTGCATTTCAGATGTTTCACAGAAGGGACGGAC
AGATCTTGAAAGAAGGTGTTCTTACGAAAAGAGCCATTGGTAAAAGTATC
CTAACTGGACCATTAAATTTCAAAGAAAGATGGGTTGTTTTAACAGAAAA
AGCTTTGACATACAATGAAATATCTGATGAGCAATATCAAACAAAGACAA
CTCACTCTACGAGAAATATCATTCAGGTGTTTTCATAAACAACCAATGGA
CTTGTTGTAAGTCACAGGTGAAGAAAGAATCAGGTTGTAAAGAAAGTTAT
TATTCTGGAAACAGTAAGTTAATTTGTGTTATCCTATTACCTCAANTAAA
GAAAGTTATTATTCTGGAAACAGTAAGTTAAGTGATCTTTGAGGACTTCA
TCTTGTATTTGATTGCCTCTAAAGACGATGGGAGAAACGACTGGATTTCA
AATCTAAGAGATGGGTAAAGGCAAAGAGAAAGGAACACTTGATACAGGAA
ATATCAAAGGAATTGAAGAAGTTGATTATGAAGCATTTGGTAAAAACTCT
GCATTTCAGATGTTTCACAGAAGGGACGGACAGATCTTGAAAGAAGGTGT
TCTTACGAAAAGAGCCATTGGTAAAAGTATCCTAACTGGACCATTAAATT
TCAAAGAAAGATGGGTTGTTTTAACAGAAAAAGCTTTGACATACAATGAA
ATATCTGATGAGCAATATCAAACAAAGACAACTCACTCTACGAGAAATAT
CATTCAGGTGTTTTCATAAACAACCAATGGACTTGTTGTAAGTCACAGGT
GAAGAAAGAATCAGGTTGTAAAGAAAGTTATTATTCTGGAAACAGTAAGT
TAATTTGTGTTATCCTATTACCTCAANTAAAGAAAGTTATTATTCTGGAA
ACAGTAAGTTAAGTGATCTTTGAGGACTTCATCTTGTATTTGATTGCCTC
TAAAGACGATGGGAGAAACGACTGGATTTCAAATCTAAGAGATGGGTAAA
GGCAAAGAGAAAGGAACACTTGATACAGGAAATATCAAAGGAATTGAAGA
AGTTGATTATGAAGCATTTGGTAAAAACTCTGCATTTCAGATGTTTCACA
GAAGGGACGGACAGATCTTGAAAGAAGGTGTTCTTACGAAAAGAGCCATT
GGTAAAAGTATCCTAACTGGACCATTAAATTTCAAAGAAAGATGGGTTGT
TTTAACAGAAAAAGCTTTGACATACAATGAAATATCTGATGAGCAATATC
AAACAAAGACAACTCACTCTACGAGAAATATCATTCAGGTGTTTTCATAA
ACAACCAATGGACTTGTTGTAAGTCACAGGTGAAGAAAGAATCAGGTTGT
AAAGAAAGTTATTATTCTGGAAACAGTAAGTTAATTTGTGTTATCCTATT
ACCTCAANTAAAGAAAGTTATTATTCTGGAAACAGTAAGTTAAGTGATCT
TTGAGGACTTCATCTTGTATTTGATTGCCTCTAAAGACGATGGGAGAAAC
GACTGGATTTCAAATCTAAGAGATGGGTAAAGGCAAAGAGAAAGGAACAC
TTGATACAGGAAATATCAAAGGAATTGAAGAAGTTGATTATGAAGCATTT
GGTAAAAACTCTGCATTTCAGATGTTTCACAGAAGGGACGGACAGATCTT
GAAAGAAGGTGTTCTTACGAAAAGAGCCATTGGTAAAAGTATCCTAACTG
GACCATTAAATTTCAAAGAAAGATGGGTTGTTTTAACAGAAAAAGCTTTG
ACATACAATGAAATATCTGATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026490XLOC_026490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042677-exon-sc0003592-1575043694:8097..8365TCONS_00042677-exon-sc0003592-1575043694:8097..8365Clytia hemisphaericaexon
TCONS_00042677-exon-sc0003592-1575043694:7880..7975TCONS_00042677-exon-sc0003592-1575043694:7880..7975Clytia hemisphaericaexon
TCONS_00042677-exon-sc0003592-1575043694:7437..7518TCONS_00042677-exon-sc0003592-1575043694:7437..7518Clytia hemisphaericaexon
TCONS_00042677-exon-sc0003592-1575043694:6977..7232TCONS_00042677-exon-sc0003592-1575043694:6977..7232Clytia hemisphaericaexon
TCONS_00042677-exon-sc0003592-1510915933:8097..8365TCONS_00042677-exon-sc0003592-1510915933:8097..8365Clytia hemisphaericaexon
TCONS_00042677-exon-sc0003592-1510915933:7880..7975TCONS_00042677-exon-sc0003592-1510915933:7880..7975Clytia hemisphaericaexon
TCONS_00042677-exon-sc0003592-1510915933:7437..7518TCONS_00042677-exon-sc0003592-1510915933:7437..7518Clytia hemisphaericaexon
TCONS_00042677-exon-sc0003592-1510915933:6977..7232TCONS_00042677-exon-sc0003592-1510915933:6977..7232Clytia hemisphaericaexon
TCONS_00042677-exon-sc0003592-1491911889:8097..8365TCONS_00042677-exon-sc0003592-1491911889:8097..8365Clytia hemisphaericaexon
TCONS_00042677-exon-sc0003592-1491911889:7880..7975TCONS_00042677-exon-sc0003592-1491911889:7880..7975Clytia hemisphaericaexon
TCONS_00042677-exon-sc0003592-1491911889:7437..7518TCONS_00042677-exon-sc0003592-1491911889:7437..7518Clytia hemisphaericaexon
TCONS_00042677-exon-sc0003592-1491911889:6977..7232TCONS_00042677-exon-sc0003592-1491911889:6977..7232Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042677-proteinTCONS_00042677-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003592supercontigsc0003592:6977..8365 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.61808	7.91375	2.43946	1.43198	38.8367	28.5464	25.8531	31.983	24.1471	27.2114	18.7722	16.4057	21.5413	16.0713	14.9663	13.6542	20.3252	25.5297	14.1999	27.082	19.859	22.3535	16.0571	19.6889	15.8841	20.3696	40.0796	28.0606	28.6962	33.7848
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001849PH_domain
IPR011993PH_dom-like
IPR001562Znf_Btk_motif
Vocabulary: Biological Process
TermDefinition
GO:0035556intracellular signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035556 intracellular signal transduction
Blast
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BLAST of TCONS_00042677 vs. Swiss-Prot (Human)
Match: BMX (Cytoplasmic tyrosine-protein kinase BMX OS=Homo sapiens GN=BMX PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.870e-20
Identity = 47/144 (32.64%), Postives = 82/144 (56.94%), Query Frame = 3 
Query:  132 DGQILKEGVLTKRAIGKSILTGPLNFKERWVVLTEKALTYNEISDEGKGKEKGTLDTGNIKGIEEVDYE---AFGKNSAFQVIFEDFILYLIASKDDGRNDWISNLRDAISNKDNSLYEKYHSGVFINNQWTCCKSQVKKESGC 554
            D + + E +L KR+  K  ++ P N+KER  VLT+  L+Y E     +G  KG+++   I+ +E+V+ E      +   FQ++++D +LY+ AS ++ R+ W+  L+  I    + L  KYHSG F++ ++ CC+   K   GC
Sbjct:    2 DTKSILEELLLKRSQQKKKMS-PNNYKERLFVLTKTNLSYYEYDKMKRGSRKGSIEIKKIRCVEKVNLEEQTPVERQYPFQIVYKDGLLYVYASNEESRSQWLKALQKEIRGNPH-LLVKYHSGFFVDGKFLCCQQSCKAAPGC 143
The following BLAST results are available for this feature:
BLAST of TCONS_00042677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BMX8.870e-2032.64Cytoplasmic tyrosine-protein kinase BMX OS=Homo sa... [more]
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