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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042669 ID=TCONS_00042669|Name=TCONS_00042669|organism=Clytia hemisphaerica|type=transcript|length=1210bp
CTGGCAACGATGGAGTTTTAAGCATGTTCTTAGCTGATGTGTTGGTTGGT
CATTCGACAACTGGCAATTCAACATACGATAGACCACCAGAACGAACCAG
AAACATTCTTTACGATAGCTGTGTTGATATGAAACATAACCCATCCATAT
TTGTCATTTTCGAACGAGATCAATTTTATCCGAGGTATCTCGTGAAATAT
CGACGACGTTAAACCAAGGTTTTGGTGTTATTGACAATCTTGAGAGATAC
ACGCACAGAACGGTTTTTTGTTTATGAGAAGTTATCATATCACCGTTATT
CGGATTTCTTCTCTTGTGAAGGATTTTACAAATAAACAAACCGTCAAGTT
TCTCAGGTCCGGccgaagcggggagactggggagccTTCcaattttgagc
aaatgagtttttctcaaattcctagcgaattttatctcattttgagcctt
cagcctccctacttttacggttgttccgccgagCCTGTTCTTTTTACAAA
TTCTGGTCTAAAACCTGTAGATTATTGTATATttatacattttattcaaa
atattggACATTTGTCGGAAGCAAATTGGGATTTTTGATCAAAACGATTA
GATGGGGCATCAATTGCCTGAGGTTTTACTAAGCTATGGTCATGGAGAAA
ATTGCTGTTCTAAATTCACATTTTTATCCGAATAACCCCTTCAGCTATGT
TACTTTCTACTtataaatttaaataaattcTCTTTTGGATTAATTTTTAT
CCCTCTCCTGATATTTTTTAACTAGCGTTTTGACACAGAGGTTTGATTCC
AGgagaaaaaacaactttctcattttggaaaaaatgttgaaaaatataaa
aagttttAGTGTGGGATCgtatgaaattgtttttgagtGAATTTCAGGTT
ACTCCAAATTTGGGGCACTTTTTGGCGGCCCTTTGATATCGGAGCACTGA
GTTTAGTTTCTTTTGATTGTTGGTTAattattttaatatattttggcATG
GAGGTattaaaaatatagatggagagaaaacgtctcggtaatgacctaaa
tgatcgttgaaatcttttataaatctattcaaagcggcttttttttatgt
accatcattggaagcaaaaaaatctgaaatgtAAATTTCtaagaacagaa
gtgagaatgttatcctgattgaaataaacattttatgcaaaaagttcttg
ttcaaatgcg Run BLAST on NCBI transcript from alignment at sc0003588:1..1544+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042669 ID=TCONS_00042669|Name=TCONS_00042669|organism=Clytia hemisphaerica|type=transcript|length=1544bp|location=Sequence derived from alignment at sc0003588:1..1544+ (Clytia hemisphaerica)
CTGGCAACGATGGAGTTTTAAGCATGTTCTTAGCTGATGTGTTGGTTGGT
CATTCGACAACTGTAAGTTTATTTATAAGCTGTCTTATTTAGGATCCAGG
CTGATGTAATAATAGAAAGTTGTTTatcattgttttgtttttatgcaGCG
AGAAATTAAGAAACTTGCCATTAATACGTACACAGTCATAGACTCTGTTT
TCATAATTAGTGCACTTAGACTCAGAAAGGCGTCGATTTAACCCTTATGG
AAAATCTTCTTTTCCTTTTCGACCAAAATTCTTATAAGGATTTCAGAGTT
GTAGTGACCACCTATTTTATTTCAAGGTGCTCAACTTTAAATTAAGATCT
CAACAAATGTCCACTCGAAACTTTCCAATCTAATTTCCTCTACCAGGGCA
ATTCAACATACGATAGACCACCAGAACGAACCAGAAACATTCTTTACGAT
AGCTGTGTTGATATGAAACATAACCCATCCATATTTGTCATTTTCGAACG
AGATCAATTTTATCCGAGGTATCTCGTGAAATATCGACGACGTTAAACCA
AGGTTTTGGTGTTATTGACAATCTTGAGAGATACACGCACAGAACGGTTT
TTTGTTTATGAGAAGTTATCATATCACCGTTATTCGGATTTCTTCTCTTG
TGAAGGATTTTACAAATAAACAAACCGTCAAGTTTCTCAGGTCCGGccga
agcggggagactggggagccTTCcaattttgagcaaatgagtttttctca
aattcctagcgaattttatctcattttgagccttcagcctccctactttt
acggttgttccgccgagCCTGTTCTTTTTACAAATTCTGGTCTAAAACCT
GTAGATTATTGTATATttatacattttattcaaaatattggACATTTGTC
GGAAGCAAATTGGGATTTTTGATCAAAACGATTAGATGGGGCATCAATTG
CCTGAGGTTTTACTAAGCTATGGTCATGGAGAAAATTGCTGTTCTAAATT
CACATTTTTATCCGAATAACCCCTTCAGCTATGTTACTTTCTACTtataa
atttaaataaattcTCTTTTGGATTAATTTTTATCCCTCTCCTGATATTT
TTTAACTAGCGTTTTGACACAGAGGTTTGATTCCAGgagaaaaaacaact
ttctcattttggaaaaaatgttgaaaaatataaaaagttttAGTGTGGGA
TCgtatgaaattgtttttgagtGAATTTCAGGTTACTCCAAATTTGGGGC
ACTTTTTGGCGGCCCTTTGATATCGGAGCACTGAGTTTAGTTTCTTTTGA
TTGTTGGTTAattattttaatatattttggcATGGAGGTattaaaaatat
agatggagagaaaacgtctcggtaatgacctaaatgatcgttgaaatctt
ttataaatctattcaaagcggcttttttttatgtaccatcattggaagca
aaaaaatctgaaatgtAAATTTCtaagaacagaagtgagaatgttatcct
gattgaaataaacattttatgcaaaaagttcttgttcaaatgcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042669-exon-sc0003588-1491911889:1..62 | TCONS_00042669-exon-sc0003588-1491911889:1..62 | Clytia hemisphaerica | exon |
| TCONS_00042669-exon-sc0003588-1510915933:1..62 | TCONS_00042669-exon-sc0003588-1510915933:1..62 | Clytia hemisphaerica | exon |
| TCONS_00042669-exon-sc0003588-1575043694:1..62 | TCONS_00042669-exon-sc0003588-1575043694:1..62 | Clytia hemisphaerica | exon |
| TCONS_00042669-exon-sc0003588-1491911889:397..1544 | TCONS_00042669-exon-sc0003588-1491911889:397..1544 | Clytia hemisphaerica | exon |
| TCONS_00042669-exon-sc0003588-1510915933:397..1544 | TCONS_00042669-exon-sc0003588-1510915933:397..1544 | Clytia hemisphaerica | exon |
| TCONS_00042669-exon-sc0003588-1575043694:397..1544 | TCONS_00042669-exon-sc0003588-1575043694:397..1544 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003588 | supercontig | sc0003588:1..1544 + |
Blast
The following BLAST results are available for this feature:
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