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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042663 ID=TCONS_00042663|Name=TCONS_00042663|organism=Clytia hemisphaerica|type=transcript|length=1680bp
CTTTGAACACTGAATACGTGAGATAACCTGCTAAACATTAAACGATGATT
TCTTCATGATTCCTTCTCCCTCATTCTCATATTACCCCTTTCGTGAATTC
AGAATTTCATAATTGCTTTTGCTTCATCAAATTCGTCATTataatatttc
atttcattttttccagGTGACAGATGGAAATGTAACCCAGTCAACCTCTC
AAGCCAATAATGATTCGAATACCAATCACGACGACGTACCGGCAGAACTT
GCTTTTCTTGATCCTGACAGGGAACAAAACGGGCAGTACATGCTGGTATT
GAGGAACGATCACAAGCTATGTCCAAAGAGAGTCACTCGCTGCCAGCAGT
GTCAAATTGCTTTCACAGACGAAACTGATAGATTTGTTCTAAAAACAAGA
GGGATGAGAGAGAGACCACCCGATAAAGATAAAGGTGGAAGAAAACTGTA
CGAAGGGAATGTTTACCTACATTTTCTAACTGATTGTTTAAAGAAATGGG
ACAAAAAGTTTAAGTATGAAACTGTTATTGTGCCAAATTCAACTAAAGAA
AAAACACAAGACAAATGGAAACCCTATTTACggaaaaaaggcatcaaaat
ctAAGTTCAGAACTTGTTACGGACTTATAAGCATACAGTAGACAAAACat
tcttttgttaattttagCACCTTGCTATTCTCAGCACTGTACTGAAGGTT
TTATTTTACTTatctctttttgttaaaaaacaaattatatgaTATTTTTG
TCAAAATATCTGATGTAATACTTTTGTCAAAATATTTGTTTTGATTTTGT
GTCAGATAATGCACAACTAAATTTGAGAAGAAAGCCGATTACAATCTCTT
GTGTCAATTTTAATAAGCTTTCATGTTCAACTAACTTTTGTTCATTCTAT
TTTTCTTACCAAGACCAAGTGCTTTTTCTAGTCAAAACACAGAACTCAAA
TAATCAAAAGCTATTTGATGGTGATGATCAAGATTTAGTGACTAGGATTA
AAATAGTAAATTAGTATTGATTTTACAGTTACATTTATTTTATCAAGCTA
TTATAACCGGAATACTGTAAGCAAACATCTTTAACCAATAGATTTACTGA
TTTCAAAGAATAATCTTCTTTTTTACTGTGATAATCAACCAAATTTGAAG
GGAAACGGACAAGCCAATCACGAGATATAGGTGTCCGGATTCCAGTACCA
AAAAGGGCCCAAATGATGACGTCATCACCAGAATTGACAAAAACTAATTA
TGTTAACTTCAAGGCATCATTGTCAAGGTTTTACCTGCCAAATTTGAAGG
GAAACAGACAAGCCAATCACGAGATATAGGTGTCCGAAGAGTAGACCTAG
CCATGACGTCATAAGCCTTAAAACAATTGACTGATGACAATATCAAGACA
ATGGAGTGTCAATTTCACATCTACAGAACTCGTTACCTAAGTCTAGTACT
GGTTACTTCCATTTAAGTACTGGTTACTTCTGGTTACTTCTGGTTACCTA
CTGGTTACTTACTGGTTACTTCTGGTTACTTCTCGTTACTTACTGGTTAC
TTCTGGTTACTTCTGGTTACTTCTCGTTACTTCTCGTTACTTCTGGTTAC
CTACTGGTTACTTCtggttacttctcgttacttctggttacttctcgtta
cttctcgttccTCGTTTTAGTAACAACCTG Run BLAST on NCBI protein sequence of TCONS_00042663-protein >TCONS_00042663-protein ID=TCONS_00042663-protein|Name=TCONS_00042663-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MLVLRNDHKLCPKRVTRCQQCQIAFTDETDRFVLKTRGMRERPPDKDKGG
RKLYEGNVYLHFLTDCLKKWDKKFKYETVIVPNSTKEKTQDKWKPYLRKK
GIKI Run BLAST on NCBI transcript from alignment at sc0003580:6056..7735 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042663 ID=TCONS_00042663|Name=TCONS_00042663|organism=Clytia hemisphaerica|type=transcript|length=1680bp|location=Sequence derived from alignment at sc0003580:6056..7735 (Clytia hemisphaerica)
CAGGTTGTTACTAAAACGAggaacgagaagtaacgagaagtaaccagaag
taacgagaagtaaccaGAAGTAACCAGTAGGTAACCAGAAGTAACGAGAA
GTAACGAGAAGTAACCAGAAGTAACCAGAAGTAACCAGTAAGTAACGAGA
AGTAACCAGAAGTAACCAGTAAGTAACCAGTAGGTAACCAGAAGTAACCA
GAAGTAACCAGTACTTAAATGGAAGTAACCAGTACTAGACTTAGGTAACG
AGTTCTGTAGATGTGAAATTGACACTCCATTGTCTTGATATTGTCATCAG
TCAATTGTTTTAAGGCTTATGACGTCATGGCTAGGTCTACTCTTCGGACA
CCTATATCTCGTGATTGGCTTGTCTGTTTCCCTTCAAATTTGGCAGGTAA
AACCTTGACAATGATGCCTTGAAGTTAACATAATTAGTTTTTGTCAATTC
TGGTGATGACGTCATCATTTGGGCCCTTTTTGGTACTGGAATCCGGACAC
CTATATCTCGTGATTGGCTTGTCCGTTTCCCTTCAAATTTGGTTGATTAT
CACAGTAAAAAAGAAGATTATTCTTTGAAATCAGTAAATCTATTGGTTAA
AGATGTTTGCTTACAGTATTCCGGTTATAATAGCTTGATAAAATAAATGT
AACTGTAAAATCAATACTAATTTACTATTTTAATCCTAGTCACTAAATCT
TGATCATCACCATCAAATAGCTTTTGATTATTTGAGTTCTGTGTTTTGAC
TAGAAAAAGCACTTGGTCTTGGTAAGAAAAATAGAATGAACAAAAGTTAG
TTGAACATGAAAGCTTATTAAAATTGACACAAGAGATTGTAATCGGCTTT
CTTCTCAAATTTAGTTGTGCATTATCTGACACAAAATCAAAACAAATATT
TTGACAAAAGTATTACATCAGATATTTTGACAAAAATAtcatataatttg
ttttttaacaaaaagagatAAGTAAAATAAAACCTTCAGTACAGTGCTGA
GAATAGCAAGGTGctaaaattaacaaaagaatGTTTTGTCTACTGTATGC
TTATAAGTCCGTAACAAGTTCTGAACTTagattttgatgccttttttccG
TAAATAGGGTTTCCATTTGTCTTGTGTTTTTTCTTTAGTTGAATTTGGCA
CAATAACAGTTTCATACTTAAACTTTTTGTCCCATTTCTTTAAACAATCA
GTTAGAAAATGTAGGTAAACATTCCCTTCGTACAGTTTTCTTCCACCTTT
ATCTTTATCGGGTGGTCTCTCTCTCATCCCTCTTGTTTTTAGAACAAATC
TATCAGTTTCGTCTGTGAAAGCAATTTGACACTGCTGGCAGCGAGTGACT
CTCTTTGGACATAGCTTGTGATCGTTCCTCAATACCAGCATGTACTGCCC
GTTTTGTTCCCTGTCAGGATCAAGAAAAGCAAGTTCTGCCGGTACGTCGT
CGTGATTGGTATTCGAATCATTATTGGCTTGAGAGGTTGACTGGGTTACA
TTTCCATCTGTCACctggaaaaaatgaaatgaaatattatAATGACGAAT
TTGATGAAGCAAAAGCAATTATGAAATTCTGAATTCACGAAAGGGGTAAT
ATGAGAATGAGGGAGAAGGAATCATGAAGAAATCATCGTTTAATGTTTAG
CAGGTTATCTCACGTATTCAGTGTTCAAAG Coding sequence (CDS) from alignment at sc0003580:6056..7735 >TCONS_00042663 ID=TCONS_00042663|Name=TCONS_00042663|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0003580:6056..7735 (Clytia hemisphaerica)
TTagattttgatgccttttttccGTAAATAGGGTTTCCATTTGTCTTGTG
TTTTTTCTTTAGTTGAATTTGGCACAATAACAGTTTCATACTTAAACTTT
TTGTCCCATTTCTTTAAACAATCAGTTAGAAAATGTAGGTAAACATTCCC
TTCGTACAGTTTTCTTCCACCTTTATCTTTATCGGGTGGTCTCTCTCTCA
TCCCTCTTGTTTTTAGAACAAATCTATCAGTTTCGTCTGTGAAAGCAATT
TGACACTGCTGGCAGCGAGTGACTCTCTTTGGACATAGCTTGTGATCGTT
CCTCAATACCAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042663-exon-sc0003580-1491911889:6056..7735 | TCONS_00042663-exon-sc0003580-1491911889:6056..7735 | Clytia hemisphaerica | exon |
| TCONS_00042663-exon-sc0003580-1510915933:6056..7735 | TCONS_00042663-exon-sc0003580-1510915933:6056..7735 | Clytia hemisphaerica | exon |
| TCONS_00042663-exon-sc0003580-1575043694:6056..7735 | TCONS_00042663-exon-sc0003580-1575043694:6056..7735 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003580 | supercontig | sc0003580:6056..7735 . |
Blast
The following BLAST results are available for this feature:
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