TCONS_00042662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042662
Unique NameTCONS_00042662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042662 ID=TCONS_00042662|Name=TCONS_00042662|organism=Clytia hemisphaerica|type=transcript|length=831bp
TTTGGATAGAGCTTGAATAGGCAAATACAGGAACATTTTGCACAAAATCT
GTTTTGTCTTTATAGCGAGTTGTATACATAGTATGTTTTGGCGTTGTATT
TATTCATTATTTGGACGTTTTGGCTTTCTCTAATTGGAGCTTCTTACCCA
GTGGGATAAAAATGAAGAGGTTATATAAGTATGggattttgaattctttt
ttcagtGGGGGTTCTGAAAATTATTGTCGTTCCCAACTGAGGAGATGCAA
TTTCAGAGTactcttgtgtgcttaattgtagggggtgtaataagcagggg
gtaggtactccagataaaaatcaacaaaatgggggggggggtcataatta
agtgctattgacctgattttgccaaaaattcctcggaaaatgaaggtttt
tggccaattttagcACTTCGTAGCATAAaggtcataaaatgggggggggg
ggggaaaaaaaaaaaaaaaaaaaaaaaggggggggggggtcataattaag
tgctattgacctgattttgccaaaaattcctcggaaaatgaaggtttttg
gccaattttagcACTTCGTAGCATAAaggtcataaaatgggggggggggg
gtgtcattataaagtgatatgggggtgatttttttccaaaaattgcaaaa
tgacccCCCCTATAATTAAGCATACAAGAGTAAACGAATCGGTCTTGAAG
GCTAAATCTTGTTGAAAGTGGGTCATTAAGATACGCTAGATTTTTGTAGA
AAACGCAAATTATTTCTGAGTATCCACATTTTTTTAGGCTACTACTTCAT
TATCACGAAAGaacataaaaatatatacacg
Run BLAST on NCBI

transcript from alignment at sc0003580:4942..5772

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042662 ID=TCONS_00042662|Name=TCONS_00042662|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at sc0003580:4942..5772 (Clytia hemisphaerica)
cgtgtatatatttttatgttCTTTCGTGATAATGAAGTAGTAGCCTAAAA
AAATGTGGATACTCAGAAATAATTTGCGTTTTCTACAAAAATCTAGCGTA
TCTTAATGACCCACTTTCAACAAGATTTAGCCTTCAAGACCGATTCGTTT
ACTCTTGTATGCTTAATTATAGGGGgggtcattttgcaatttttggaaaa
aaatcacccccatatcactttataatgacacccccccccccccattttat
gacctTTATGCTACGAAGTgctaaaattggccaaaaaccttcattttccg
aggaatttttggcaaaatcaggtcaatagcacttaattatgacccccccc
cccctttttttttttttttttttttttccccccccccccccattttatga
cctTTATGCTACGAAGTgctaaaattggccaaaaaccttcattttccgag
gaatttttggcaaaatcaggtcaatagcacttaattatgacccccccccc
cattttgttgatttttatctggagtacctaccccctgcttattacacccc
ctacaattaagcacacaagagtACTCTGAAATTGCATCTCCTCAGTTGGG
AACGACAATAATTTTCAGAACCCCCactgaaaaaagaattcaaaatccCA
TACTTATATAACCTCTTCATTTTTATCCCACTGGGTAAGAAGCTCCAATT
AGAGAAAGCCAAAACGTCCAAATAATGAATAAATACAACGCCAAAACATA
CTATGTATACAACTCGCTATAAAGACAAAACAGATTTTGTGCAAAATGTT
CCTGTATTTGCCTATTCAAGCTCTATCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026476XLOC_026476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042662-exon-sc0003580-1491911889:4942..5772TCONS_00042662-exon-sc0003580-1491911889:4942..5772Clytia hemisphaericaexon
TCONS_00042662-exon-sc0003580-1510915933:4942..5772TCONS_00042662-exon-sc0003580-1510915933:4942..5772Clytia hemisphaericaexon
TCONS_00042662-exon-sc0003580-1575043694:4942..5772TCONS_00042662-exon-sc0003580-1575043694:4942..5772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003580supercontigsc0003580:4942..5772 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.342229	0.611833	0.516652	0.919303	0.231139	0.303913	0.0741067	0.274609	3.08535	3.4531	1.67583	2.92501	1.13803	0.866693	0.777316	1.21651	0.813548	1.33925	0.970125	1.26896	0.716921	0.976825	1.17718	0.891856	0.551154	0.601201	1.25137	1.25203	0.633079	0.387005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top