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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042660 ID=TCONS_00042660|Name=TCONS_00042660|organism=Clytia hemisphaerica|type=transcript|length=1268bp
AAAAGAGTACCATGATGAGGGGTTatgcaaaaagtgaaatatggaATCCC
TGCATGCTCCATTTCTAACAAAATGTTAACTTTTCAATTCTAGGGGTGCT
TGAGATTGAACAAATGCTTGCTTGAACAtaatttctcaaatattacccaa
taaaattttgaatgaagttAGTGATTTATCCAACGAAAAAGTGGAATAAC
TCCTCCAGAATTTCTATAAATGGAACaattcttccttttatggaTTGCTA
ACGCTTAAAGGCTTCTGCCTGCCAAATTTTAGCCCAAAAGCTTAAAAACT
CTATGAGTTATTACCGATGGAATATTTCTTCCATTTCCCAATGGAATAAA
TTTATGATTAACTGCTCCAAACTTTGAAAGATCGTTACTTTTAGTATAAT
AACGCTATATAGTTCATTTAAAAAGGAATGGAATCTTCGATCTTTTCTCT
CTCTAATAGAaccaataaatttgaaaatgaacgaAAACTTGCACTCTAAA
ATTTGGTTTCAAAGAAGTGCCAAAACtttcacgtttttgccaaaagtgta
aaaaacactgacAGAACCAGTTTTCTGTTTACGCCGTTTTCTGCCGGACC
CCGAAATTGTGTCGGGCAACGTTTCGCAATGATGGAATTGAAAATCGCAT
TATACCATTTGGTAAAGAAATATGGGATTAGTTCGAGTCAAAATGAAAGT
GAAGTAATGCAAACGTTTGAAACAATTAATACTTCGTTGAAtggtttgaa
aatcaaattgacGAGACGACAGAATACATCATAAACAGCTTGGTAATGTC
ACGACTACCCAGTCAAACGAactaaaaaactcaaaaagatatACGTATTG
TCTAAAATCAAAAGTTGTACGCAACCTTGTCATGTAATATATCAATGGAT
GAGAAAAATTGAGGAGATTTGGaattttcaagagaaaatgtcataaagaa
gaacttaaaactTTTTAGGATTTGATGCAAATTTTCAGCTTAAATAAGAT
TGTGTGGGTATAAATGGTCCGAACAAATTTCTAGCTTTAGCTCTAACGCT
AATGCTTTTCATGAGGGAAACCCATACTAAAAGTAGTTTTAATTAAGACC
AATTGACCAAATAGATTCGGTAATAatggatatggttaaaatattttcgg
tgatttttttgttatcacAATTATTTtaatactagccggtacccggcgtc
gcacgccggttaagctgtagctgaacgcactaaaagtcctttggatgttg
aagctggcttaaaaagcg Run BLAST on NCBI transcript from alignment at sc0003580:439..1706 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042660 ID=TCONS_00042660|Name=TCONS_00042660|organism=Clytia hemisphaerica|type=transcript|length=1268bp|location=Sequence derived from alignment at sc0003580:439..1706 (Clytia hemisphaerica)
cgctttttaagccagcttcaacatccaaaggacttttagtgcgttcagct
acagcttaaccggcgtgcgacgccgggtaccggctagtattaAAATAATT
gtgataacaaaaaaatcaccgaaaatattttaaccatatccatTATTACC
GAATCTATTTGGTCAATTGGTCTTAATTAAAACTACTTTTAGTATGGGTT
TCCCTCATGAAAAGCATTAGCGTTAGAGCTAAAGCTAGAAATTTGTTCGG
ACCATTTATACCCACACAATCTTATTTAAGCTGAAAATTTGCATCAAATC
CTAAAAagttttaagttcttctttatgacattttctcttgaaaattCCAA
ATCTCCTCAATTTTTCTCATCCATTGATATATTACATGACAAGGTTGCGT
ACAACTTTTGATTTTAGACAATACGTatatctttttgagttttttagtTC
GTTTGACTGGGTAGTCGTGACATTACCAAGCTGTTTATGATGTATTCTGT
CGTCTCgtcaatttgattttcaaaccaTTCAACGAAGTATTAATTGTTTC
AAACGTTTGCATTACTTCACTTTCATTTTGACTCGAACTAATCCCATATT
TCTTTACCAAATGGTATAATGCGATTTTCAATTCCATCATTGCGAAACGT
TGCCCGACACAATTTCGGGGTCCGGCAGAAAACGGCGTAAACAGAAAACT
GGTTCTgtcagtgttttttacacttttggcaaaaacgtgaaaGTTTTGGC
ACTTCTTTGAAACCAAATTTTAGAGTGCAAGTTTtcgttcattttcaaat
ttattggtTCTATTAGAGAGAGAAAAGATCGAAGATTCCATTCCTTTTTA
AATGAACTATATAGCGTTATTATACTAAAAGTAACGATCTTTCAAAGTTT
GGAGCAGTTAATCATAAATTTATTCCATTGGGAAATGGAAGAAATATTCC
ATCGGTAATAACTCATAGAGTTTTTAAGCTTTTGGGCTAAAATTTGGCAG
GCAGAAGCCTTTAAGCGTTAGCAAtccataaaaggaagaattGTTCCATT
TATAGAAATTCTGGAGGAGTTATTCCACTTTTTCGTTGGATAAATCACTa
acttcattcaaaattttattgggtaatatttgagaaattaTGTTCAAGCA
AGCATTTGTTCAATCTCAAGCACCCCTAGAATTGAAAAGTTAACATTTTG
TTAGAAATGGAGCATGCAGGGATtccatatttcactttttgcatAACCCC
TCATCATGGTACTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042660-exon-sc0003580-1491911889:439..1706 | TCONS_00042660-exon-sc0003580-1491911889:439..1706 | Clytia hemisphaerica | exon |
| TCONS_00042660-exon-sc0003580-1510915933:439..1706 | TCONS_00042660-exon-sc0003580-1510915933:439..1706 | Clytia hemisphaerica | exon |
| TCONS_00042660-exon-sc0003580-1575043694:439..1706 | TCONS_00042660-exon-sc0003580-1575043694:439..1706 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003580 | supercontig | sc0003580:439..1706 . |
Blast
The following BLAST results are available for this feature:
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