TCONS_00042649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042649
Unique NameTCONS_00042649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042649 ID=TCONS_00042649|Name=TCONS_00042649|organism=Clytia hemisphaerica|type=transcript|length=780bp
ACACCGAAGAGACAGAAAGCGTaccgaaaaagaagaaaaagaaaaagcac
AAGAACGTCACTTTCGATATTACCGAGAACAGCTCTACGGATGGGAGCGA
ACAAATTAAACAAGAAGAAGAGGAGGAGTGTACCgaaatgaaaaaatctt
aaaagagaaagcataaaaaatcacagaaatCGTCGTATATGGTCGAAGAA
GAAACCTCTGAGGAGGAAAATGTTGacgttaaaaagaaaaagaaaaagaa
aaaagcacgTCTGGAGGAGGGTACTGACGAACAACAGTACGTCCTTTGTC
GCgagaaaaaggagaaaagtaAAGACCGTGCGGAGGAGAGCACAACAAAT
CAGAATAGCGATGAACAATCGAGTTCGAATTCTGAATCGCCTCAAccgtc
aaaatcaaaaaaatcgatgaaaaagaaaaacagtaaAAATGTTGAAGAAT
TCGAAAATGAAAGTAAGAACATTGTTGATGAagaaacgatgacgtcatcg
tcttCATCGAGTATAAACcgaaaaaaaagaagcgaaGACACGAAGAAAAC
GAAGAGGTGAGTCATTAAAATGAAGGAGGAGAAGAGAGGAAAAAGAAACG
AAAGACAAGACATCAATCTGATGGAGAAGATGGAGCTAATTGAATTATTT
TAAATGGATTTTCTTAAGATTTTGTACTTTATTTGTCGTAAACTTtcaat
tttctggcaaaaactTGCCTTTAATCTTTGCTTTAAACTTAAGAGGACAA
AGAAGGGTGTTTTGCAATtgaatatttgag
Run BLAST on NCBI

protein sequence of TCONS_00042649-protein

>TCONS_00042649-protein ID=TCONS_00042649-protein|Name=TCONS_00042649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MVEEETSEEENVDVKKKKKKKKARLEEGTDEQQYVLCREKKEKSKDRAEE
STTNQNSDEQSSSNSESPQPSKSKKSMKKKNSKNVEEFENESKNIVDEET
MTSSSSSSINRKKRSEDTKKTKR
Run BLAST on NCBI

transcript from alignment at sc0003571:4369..5148

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042649 ID=TCONS_00042649|Name=TCONS_00042649|organism=Clytia hemisphaerica|type=transcript|length=780bp|location=Sequence derived from alignment at sc0003571:4369..5148 (Clytia hemisphaerica)
ctcaaatattcaATTGCAAAACACCCTTCTTTGTCCTCTTAAGTTTAAAG
CAAAGATTAAAGGCAagtttttgccagaaaattgaAAGTTTACGACAAAT
AAAGTACAAAATCTTAAGAAAATCCATTTAAAATAATTCAATTAGCTCCA
TCTTCTCCATCAGATTGATGTCTTGTCTTTCGTTTCTTTTTCCTCTCTTC
TCCTCCTTCATTTTAATGACTCACCTCTTCGTTTTCTTCGTGTCttcgct
tcttttttttcgGTTTATACTCGATGaagacgatgacgtcatcgtttctT
CATCAACAATGTTCTTACTTTCATTTTCGAATTCTTCAACATTTttactg
tttttctttttcatcgatttttttgattttgacggTTGAGGCGATTCAGA
ATTCGAACTCGATTGTTCATCGCTATTCTGATTTGTTGTGCTCTCCTCCG
CACGGTCTTtacttttctcctttttctcGCGACAAAGGACGTACTGTTGT
TCGTCAGTACCCTCCTCCAGAcgtgcttttttctttttctttttcttttt
aacgtCAACATTTTCCTCCTCAGAGGTTTCTTCTTCGACCATATACGACG
atttctgtgattttttatgctttctcttttaagattttttcatttcGGTA
CACTCCTCCTCTTCTTCTTGTTTAATTTGTTCGCTCCCATCCGTAGAGCT
GTTCTCGGTAATATCGAAAGTGACGTTCTTgtgctttttctttttcttct
ttttcggtACGCTTTCTGTCTCTTCGGTGT

Coding sequence (CDS) from alignment at sc0003571:4369..5148

>TCONS_00042649 ID=TCONS_00042649|Name=TCONS_00042649|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0003571:4369..5148 (Clytia hemisphaerica)
TCACCTCTTCGTTTTCTTCGTGTCttcgcttcttttttttcgGTTTATAC
TCGATGaagacgatgacgtcatcgtttctTCATCAACAATGTTCTTACTT
TCATTTTCGAATTCTTCAACATTTttactgtttttctttttcatcgattt
ttttgattttgacggTTGAGGCGATTCAGAATTCGAACTCGATTGTTCAT
CGCTATTCTGATTTGTTGTGCTCTCCTCCGCACGGTCTTtacttttctcc
tttttctcGCGACAAAGGACGTACTGTTGTTCGTCAGTACCCTCCTCCAG
AcgtgcttttttctttttctttttctttttaacgtCAACATTTTCCTCCT
CAGAGGTTTCTTCTTCGACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026463XLOC_026463Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042649-proteinTCONS_00042649-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042649-exon-sc0003571-1491911889:4369..5148TCONS_00042649-exon-sc0003571-1491911889:4369..5148Clytia hemisphaericaexon
TCONS_00042649-exon-sc0003571-1510915933:4369..5148TCONS_00042649-exon-sc0003571-1510915933:4369..5148Clytia hemisphaericaexon
TCONS_00042649-exon-sc0003571-1575043694:4369..5148TCONS_00042649-exon-sc0003571-1575043694:4369..5148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003571supercontigsc0003571:4369..5148 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.8836	26.7164	19.7152	20.6023	9.12925	7.36877	6.13314	7.30788	5.03517	5.43658	11.1458	13.8043	17.3676	19.7841	19.8284	14.2274	7.95017	11.9989	11.8038	11.2977	23.5368	24.8804	27.5803	29.0542	10.7272	11.5846	14.086	24.0501	13.5523	17.4055
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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