TCONS_00042647 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042647
Unique NameTCONS_00042647
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042647 ID=TCONS_00042647|Name=TCONS_00042647|organism=Clytia hemisphaerica|type=transcript|length=257bp
TAAAAGTTTAAATGAAATAGATACCGACATCATATAATTTGGGGGATTAG
TATGGTGCTGGTTTTGGGCGAATATTCAGTTTTGGGTCAAAGGCGGTTGA
AATGAGTACCATATCAAAAATTATTCGTCAAGCTATTATTATAGCCTACA
TTTTGCTACAGTATCGAATTTGTAAACTAGACTAGCTTAATAATTTTCGA
TGTTTATCGTCCGaaataatgaaagaaaatatatcGTGGTGTAGTCACTC
CCACTTC
Run BLAST on NCBI

transcript from alignment at sc0003571:3052..4122-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042647 ID=TCONS_00042647|Name=TCONS_00042647|organism=Clytia hemisphaerica|type=transcript|length=1071bp|location=Sequence derived from alignment at sc0003571:3052..4122- (Clytia hemisphaerica)
TAAAAGTTTAAATGAAATAGATACCGACATCATATAATTCGGGGGATTAG
TATGGTGCTGGTTTTGGGTGAATATTCAGTTTTGGGTCAAAGGCGGTTGA
AATGAGTACCATATCAAAAATTATTCGTCAAGCTATTATTATAGCCTACA
TTTTGCTACAGTTNATTCTGAATCGCCTCAACCGTCAAAATCAAAAAAAT
CGAAGAAAAAGAAAAACAGTAATAATGTTGAAGAATTCGAAAATGAAAGT
AAGAACATTGTTGATGAAGAAACGATGACGCCATCGTCTTCATCGAGTAA
AAAATCGAAAAAAAAAGAAGCCAAGACACGAAGAAAACGAAGAGGTGAGT
CATTAAAATGAAGGAGGAGAAGAGAGGAAAAAGAAACGAAAGAAAAGACA
TCAATCTGATGGAGAAGATGGAGCTAATTGAATTATTTTAAATGGATTTT
CTTAAGATTTTGTACTTTATTTGTCGTAAACTTTCAATTTTCTGGCAAAA
ACTTGCCTTTAATCTTTGCTTTAAACTTAAGAGGACAAAGAAGGGTGTTT
TGCAATTGAATATTTGAGAAAAATATGCTTTGAATGTCTTCTTCCTTTCG
GAAGATCTCTCTGAGAAATATCTGAAGTCTAGAGCCCTCCTTCGCAACAA
TATATGAGAAATGAGTTTGTATAGTTGAAAAGGGATAGGAATCAATTAAT
GCTATTACTTAAGCCATATTTTCAAGTTTCAGTCAATTACAAACGAAAAC
TCTACTTAATTTTGCTAACGCTAAACTTTTACTGAGGCGCTAGCTAGCCA
TTTTCCCAATCCGTTAAAAGTTTAAATGAGATAGATACCGACATCATATA
ATTTGGGGGATTAGTATGGTGCTGGTTTTGGGCGAATATTCAGTTTTGGG
TCAAAGGCGGTTGAAATGAGTACCATATCAAAAATTATTCGTCAAGCTAT
TATTATAGCCTACATTTTGCTACAGTATCGAATTTGTAAACTAGACTAGC
TTAATAATTTTCGATGTTTATCGTCCGAAATAATGAAAGAAAATATATCG
TGGTGTAGTCACTCCCACTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026461XLOC_026461Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042647-exon-sc0003571-1575043694:4095..4122TCONS_00042647-exon-sc0003571-1575043694:4095..4122Clytia hemisphaericaexon
TCONS_00042647-exon-sc0003571-1575043694:3052..3280TCONS_00042647-exon-sc0003571-1575043694:3052..3280Clytia hemisphaericaexon
TCONS_00042647-exon-sc0003571-1510915933:4095..4122TCONS_00042647-exon-sc0003571-1510915933:4095..4122Clytia hemisphaericaexon
TCONS_00042647-exon-sc0003571-1510915933:3052..3280TCONS_00042647-exon-sc0003571-1510915933:3052..3280Clytia hemisphaericaexon
TCONS_00042647-exon-sc0003571-1491911889:4095..4122TCONS_00042647-exon-sc0003571-1491911889:4095..4122Clytia hemisphaericaexon
TCONS_00042647-exon-sc0003571-1491911889:3052..3280TCONS_00042647-exon-sc0003571-1491911889:3052..3280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003571supercontigsc0003571:3052..4122 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.670186	0.77815	0	0	0	0	0	0	0	0	0	0	0.475477	0.391165	0.418796	0	0	0	0	1.32896	0	1.58406	2.14921	0	2.63416	0	0	0	0.783593
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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