TCONS_00042646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042646
Unique NameTCONS_00042646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042646 ID=TCONS_00042646|Name=TCONS_00042646|organism=Clytia hemisphaerica|type=transcript|length=347bp
TATTTAACTGCATTTAACTTAAGAACAAACCGGTTAATAGCAAAATTGTT
TGGGATTTGGTAAACTTTTCCTTCAAGGACAAGAACCAAACAATAATGGG
CGGTCTggccaaaagaaattctacacCAAAGCAAAGCCCGTTACCATACA
AAAAAgcttttgggaaaattttgCTTGTTGGGGAGGCGGCGCCGTttggc
gtttatttggaacctcaAGAGTAAAGGCATATCACTCAGAAATATAGTAT
AGAAATAAATTTTGCTTTAAATTACCCATCTTTAGctaaaacagaaaaag
aaaaagaaaaagaaggaaaataaagccatttaaaaccaaaatttctg
Run BLAST on NCBI

transcript from alignment at sc0003570:10345..10691

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042646 ID=TCONS_00042646|Name=TCONS_00042646|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at sc0003570:10345..10691 (Clytia hemisphaerica)
cagaaattttggttttaaatggctttattttccttctttttctttttctt
tttctgttttagCTAAAGATGGGTAATTTAAAGCAAAATTTATTTCTATA
CTATATTTCTGAGTGATATGCCTTTACTCTtgaggttccaaataaacgcc
aaACGGCGCCGCCTCCCCAACAAGcaaaattttcccaaaagcTTTTTTGT
ATGGTAACGGGCTTTGCTTTGgtgtagaatttcttttggccAGACCGCCC
ATTATTGTTTGGTTCTTGTCCTTGAAGGAAAAGTTTACCAAATCCCAAAC
AATTTTGCTATTAACCGGTTTGTTCTTAAGTTAAATGCAGTTAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026460XLOC_026460Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042646-exon-sc0003570-1491911889:10345..10691TCONS_00042646-exon-sc0003570-1491911889:10345..10691Clytia hemisphaericaexon
TCONS_00042646-exon-sc0003570-1510915933:10345..10691TCONS_00042646-exon-sc0003570-1510915933:10345..10691Clytia hemisphaericaexon
TCONS_00042646-exon-sc0003570-1575043694:10345..10691TCONS_00042646-exon-sc0003570-1575043694:10345..10691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003570supercontigsc0003570:10345..10691 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.514169	0.501396	0	0.569561	1.04008	0.821884	0.661045	0.618863	0.866561	1.34172	1.82323	0.856084	0.512936	0.53269	0.583924	0.46998	1.54394	0.989055	0	2.00182	1.24282	0.727444	0	0.267987	0	0.246341	1.41006	1.50485	0.856031	0.87216
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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