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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042643 ID=TCONS_00042643|Name=TCONS_00042643|organism=Clytia hemisphaerica|type=transcript|length=2450bp
GCTAAGAAGGTGGTGCCTCCACCTATTGAAGCTCTGCTGCTGCCGATGAC
GGCTGAAAATCAGAATCTTCCTTTGGgcactgaagaaaaaaaaggggTGA
TTGTAACCAGGGGTGAGATGCAGATAACTCGCATTAAAAAGCACAGGTAG
CTGGGTCGTCGAATGGGGGCTCGCTTGCAGAAGGGACAGTTTGCGAACAT
TAATCATGCAGACCATGACCATTGCCCCGAATGAGGAAATTTCTGTTGGT
TGGAAGGAGAATTATTGGAGAGGAGAATTCGAGGGATAGGGCCCCCTTCC
CAAGCTGAAATGATTAGATTAGCTAAACAcctattttgaaagaaaaaaat
aactaaGTAAACGAATAAATAAGACAAATAAAAAGGAACAACCGAAATGA
ATTAAATCATTAAAGAAGTTTGGGGAGAAACCAACACGCCTATAACCCTC
AAATTTTAGCCTTACAGGTGAAAAACTAAGCGTTGCAGAATGACCAGTAG
TTGTCTGCAACCAGCTGCTACCCGCAGCACTGatgattgaaattgaatat
catcAGTATATACGAAGGTGCAGGAACtcgacaaaagttgtataattgGC
AAAGTGCAGTGGAATACCATCAAAGACCCGACGAGAGCGACAGACCAGGA
AGAAGGAACGTGTTATTTATTTGAACAGTGAGTAAAGAGCAAGTTCAGGA
AGGTGGAATTAGAGGTAATCCTAAAAGAAGAACACATAAGATCAACTACA
AAGGAACAATTGATGGGGGCAGCATGATGGTTCGAGTTGGGAGAGTCAAA
TTGAATGCGGGTAGCTgaagctgaaaaaaagaaaggtCTAGTAGACACGT
CATCAGAGCCGAGCACATGTAGCAAGCAAAGGAAAAGGTGAGAACGAAAG
GTAAGAGAGAAAGAAGAGTAGCCGAATGGGAACCTTGGGAAGACCAGAGA
CCTAATTAAAGaaaattgacacaaacctaTTTGTAGTGGATTATCTGTTC
ATGTTGACTCGAGACAGCTTTAAGAAAAGCGTAAACAGCAAAAGCTTCGA
ATGCTGGAGTGTGAGTAAGATCAGCTTAGTCAAAGGACCTACTGGAGAAG
GGCCCATTGACCTTCTGCAAGACACCTAAACCTCAAGAGCATCAAAGGAA
AGAGAAATTAAGTCAGTAGGCACTGAAAGATCAGGAAGAAATGAGTCATA
GTTCTAAGGAGCAAGAATCCAGACATGCTAAGGTCCAAACAAACGCTAGA
TGGAATGATTGACATAGTGATTGGGTTTGAAGAGCTATTGCAGGAATGAT
TAAGCTTCTGAAAGTGAAATTCTGTATGGTTAAAGAAAGGGAAGCACAAA
GCAAATCAACTCAATATACAATTGGCCAAGAATAGGATTTAAGGCACAAT
GAGGAACCTATTTAACGTGCAGGACATTGACTTGCTAATCCTGTCGGGAA
TACCCAAATAAGGACCAATCATTAGGTTAGACGCAAATCAGATGTGGGTG
GAACATGAAATTAGACTTACACATGAGATAACCCACCCAAAAGTATGAAA
GCACTGACAGTGTCAGAGGAGAGATCTACGATAGTTCTAAGTAACCTCCG
CCCGGGGAACAATTCAGGTTGACAAACagaaagataaacaaaaaccGCTA
AATGGAGATACAGCTACTAAGTGGGTTGATATGTGAGGACCATATTACAA
GGACGAAAGTCAAATAAAACCAGCCCGATGTACGCCCTTTTAGAATGACA
CGCCTAGTGCTTTGGACGTGTACAAGAAGGAGAAAGGCAAAAATCTAATA
ATAATCAGGCATTTCGTTGGCTGCTCAGTATGATGGGGGAGACTTGATTG
AATTTTAAGAGATGTATGACACACCATTGTCATAGAGGGGAGGATTTGGG
GACCAAATACAAGAGGGATACTTTAACTAAACCAGTCCAAATGTACGTTC
TCCTAAATGACATGCCTTCTCTTATACTGTGCCTTGCCCCCATGCTACGT
ATACAAATGAGAAAATCGAGAATATCTGGTAATAATCGGACATTTTGTTG
GCTAAGTGTGGCGGAGACCTAATAGAGGTTCAGAAGAAAGGACACCCCAT
CATCAAGGGGAGGGAACATGTAATTCTCAAGGCCAAGTTGAAATTGGGGA
GAGAAATGCTGGAATCGCAGTGTCTTTATGGCAATTAGTTGATGTCCCCA
TCGAAAATTAACGAATCTGGCGACGAATGGGCCTTCCCGAAGTGTGCAGG
cagtaaaataataaaaaacaacaggCTCACCCAGGCGGATTTGCTGGATA
ATCTTGGACGGAGTTAGAGATAAATTTACAGTCGTTCAGGTCCAGACGTT
GTGATGAAAAAGGAATACCACAGTTAGAGATACCATTTTGGATCGTAATA
ATGCTGACTCAACAGGATGTCGGATGAGGTCGTAACTGGAACAACGGTGG Run BLAST on NCBI transcript from alignment at sc0003567:6206..8655 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042643 ID=TCONS_00042643|Name=TCONS_00042643|organism=Clytia hemisphaerica|type=transcript|length=2450bp|location=Sequence derived from alignment at sc0003567:6206..8655 (Clytia hemisphaerica)
CCACCGTTGTTCCAGTTACGACCTCATCCGACATCCTGTTGAGTCAGCAT
TATTACGATCCAAAATGGTATCTCTAACTGTGGTATTCCTTTTTCATCAC
AACGTCTGGACCTGAACGACTGTAAATTTATCTCTAACTCCGTCCAAGAT
TATCCAGCAAATCCGCCTGGGTGAGcctgttgttttttattattttactg
CCTGCACACTTCGGGAAGGCCCATTCGTCGCCAGATTCGTTAATTTTCGA
TGGGGACATCAACTAATTGCCATAAAGACACTGCGATTCCAGCATTTCTC
TCCCCAATTTCAACTTGGCCTTGAGAATTACATGTTCCCTCCCCTTGATG
ATGGGGTGTCCTTTCTTCTGAACCTCTATTAGGTCTCCGCCACACTTAGC
CAACAAAATGTCCGATTATTACCAGATATTCTCGATTTTCTCATTTGTAT
ACGTAGCATGGGGGCAAGGCACAGTATAAGAGAAGGCATGTCATTTAGGA
GAACGTACATTTGGACTGGTTTAGTTAAAGTATCCCTCTTGTATTTGGTC
CCCAAATCCTCCCCTCTATGACAATGGTGTGTCATACATCTCTTAAAATT
CAATCAAGTCTCCCCCATCATACTGAGCAGCCAACGAAATGCCTGATTAT
TATTAGATTTTTGCCTTTCTCCTTCTTGTACACGTCCAAAGCACTAGGCG
TGTCATTCTAAAAGGGCGTACATCGGGCTGGTTTTATTTGACTTTCGTCC
TTGTAATATGGTCCTCACATATCAACCCACTTAGTAGCTGTATCTCCATT
TAGCggtttttgtttatctttctGTTTGTCAACCTGAATTGTTCCCCGGG
CGGAGGTTACTTAGAACTATCGTAGATCTCTCCTCTGACACTGTCAGTGC
TTTCATACTTTTGGGTGGGTTATCTCATGTGTAAGTCTAATTTCATGTTC
CACCCACATCTGATTTGCGTCTAACCTAATGATTGGTCCTTATTTGGGTA
TTCCCGACAGGATTAGCAAGTCAATGTCCTGCACGTTAAATAGGTTCCTC
ATTGTGCCTTAAATCCTATTCTTGGCCAATTGTATATTGAGTTGATTTGC
TTTGTGCTTCCCTTTCTTTAACCATACAGAATTTCACTTTCAGAAGCTTA
ATCATTCCTGCAATAGCTCTTCAAACCCAATCACTATGTCAATCATTCCA
TCTAGCGTTTGTTTGGACCTTAGCATGTCTGGATTCTTGCTCCTTAGAAC
TATGACTCATTTCTTCCTGATCTTTCAGTGCCTACTGACTTAATTTCTCT
TTCCTTTGATGCTCTTGAGGTTTAGGTGTCTTGCAGAAGGTCAATGGGCC
CTTCTCCAGTAGGTCCTTTGACTAAGCTGATCTTACTCACACTCCAGCAT
TCGAAGCTTTTGCTGTTTACGCTTTTCTTAAAGCTGTCTCGAGTCAACAT
GAACAGATAATCCACTACAAAtaggtttgtgtcaattttCTTTAATTAGG
TCTCTGGTCTTCCCAAGGTTCCCATTCGGCTACTCTTCTTTCTCTCTTAC
CTTTCGTTCTCACCTTTTCCTTTGCTTGCTACATGTGCTCGGCTCTGATG
ACGTGTCTACTAGacctttctttttttcagcttcAGCTACCCGCATTCAA
TTTGACTCTCCCAACTCGAACCATCATGCTGCCCCCATCAATTGTTCCTT
TGTAGTTGATCTTATGTGTTCTTCTTTTAGGATTACCTCTAATTCCACCT
TCCTGAACTTGCTCTTTACTCACTGTTCAAATAAATAACACGTTCCTTCT
TCCTGGTCTGTCGCTCTCGTCGGGTCTTTGATGGTATTCCACTGCACTTT
GCcaattatacaacttttgtcgaGTTCCTGCACCTTCGTATATACTgatg
atattcaatttcaatcatCAGTGCTGCGGGTAGCAGCTGGTTGCAGACAA
CTACTGGTCATTCTGCAACGCTTAGTTTTTCACCTGTAAGGCTAAAATTT
GAGGGTTATAGGCGTGTTGGTTTCTCCCCAAACTTCTTTAATGATTTAAT
TCATTTCGGTTGTTCCTTTTTATTTGTCTTATTTATTCGTTTACttagtt
atttttttctttcaaaataggTGTTTAGCTAATCTAATCATTTCAGCTTG
GGAAGGGGGCCCTATCCCTCGAATTCTCCTCTCCAATAATTCTCCTTCCA
ACCAACAGAAATTTCCTCATTCGGGGCAATGGTCATGGTCTGCATGATTA
ATGTTCGCAAACTGTCCCTTCTGCAAGCGAGCCCCCATTCGACGACCCAG
CTACCTGTGCTTTTTAATGCGAGTTATCTGCATCTCACCCCTGGTTACAA
TCAccccttttttttcttcagtgcCCAAAGGAAGATTCTGATTTTCAGCC
GTCATCGGCAGCAGCAGAGCTTCAATAGGTGGAGGCACCACCTTCTTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042643-exon-sc0003567-1491911889:6206..8655 | TCONS_00042643-exon-sc0003567-1491911889:6206..8655 | Clytia hemisphaerica | exon |
| TCONS_00042643-exon-sc0003567-1510915933:6206..8655 | TCONS_00042643-exon-sc0003567-1510915933:6206..8655 | Clytia hemisphaerica | exon |
| TCONS_00042643-exon-sc0003567-1575043694:6206..8655 | TCONS_00042643-exon-sc0003567-1575043694:6206..8655 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003567 | supercontig | sc0003567:6206..8655 . |
Blast
The following BLAST results are available for this feature:
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