TCONS_00042641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042641
Unique NameTCONS_00042641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042641 ID=TCONS_00042641|Name=TCONS_00042641|organism=Clytia hemisphaerica|type=transcript|length=814bp
TGAAGCATGGGATGATATGTTTTTCTATCAtctaaattttaaagttttgt
ttcatttattttatttcttcatAAAGAAAACCCCACTATTCTGAGTAGCT
TAAAAATATTCTCTGTAGATTTTGTACACTGTACTGTCATAACacaaaaa
atttttctaaaagtaaAGGGTTGGTAAATTTATAAATGGAGGGGCAGAGA
CAGACAAATGTTTGTCATCATTCCATTATGTGAATCAGGCAACAACCAGA
CATTCCACATTGAACTGTTCTTTTTCATATACTGGTATTTTGTTGTAGCA
TTACAGCAACAATATAATCCACACAGATTCACACGTTCTATCAATCTTCA
AAAAGAAATGTTTCTGGGATAATGTTATTAGTCTCCAGAGGCGTAACTGC
GTGACATCATCAGTggacaaaaatttttaaaatataacaCGATCCTCCTT
TTCTTGATGATAATTGGATTCATTCACTCAATGCCAACAGTCTATTTGAC
AATACAATAGACACATTTTCAAGagaattaaaagattttttcttttcaat
cttcCTGGACTGGTTTTATTGATGTCGGTTTgtacaaaaggtttgtagaa
cCTAGCAACTTCTTTTTTCCATGGTGATTATAAGTTAAATTTGGCATCTT
TGAgtattatctaaaatatttgtaaGAGTAGCATAACAATTATATTATTT
AACGGTGAGTGGACCTTGAAAAAAAGCACACTGCATAGTTTTTATAATTA
TGAGAGTTGGTTGTTCTAGAGTTGAAAAAATAATACGTTAGAAACTCTCT
AAAAAGTAAACCCT
Run BLAST on NCBI

transcript from alignment at sc0003566:9703..10516

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042641 ID=TCONS_00042641|Name=TCONS_00042641|organism=Clytia hemisphaerica|type=transcript|length=814bp|location=Sequence derived from alignment at sc0003566:9703..10516 (Clytia hemisphaerica)
AGGGTTTACTTTTTAGAGAGTTTCTAACGTATTATTTTTTCAACTCTAGA
ACAACCAACTCTCATAATTATAAAAACTATGCAGTGTGCTTTTTTTCAAG
GTCCACTCACCGTTAAATAATATAATTGTTATGCTACTCttacaaatatt
ttagataatacTCAAAGATGCCAAATTTAACTTATAATCACCATGGAAAA
AAGAAGTTGCTAGgttctacaaaccttttgtacAAACCGACATCAATAAA
ACCAGTCCAGgaagattgaaaagaaaaaatcttttaattctCTTGAAAAT
GTGTCTATTGTATTGTCAAATAGACTGTTGGCATTGAGTGAATGAATCCA
ATTATCATCAAGAAAAGGAGGATCGtgttatattttaaaaatttttgtcc
ACTGATGATGTCACGCAGTTACGCCTCTGGAGACTAATAACATTATCCCA
GAAACATTTCTTTTTGAAGATTGATAGAACGTGTGAATCTGTGTGGATTA
TATTGTTGCTGTAATGCTACAACAAAATACCAGTATATGAAAAAGAACAG
TTCAATGTGGAATGTCTGGTTGTTGCCTGATTCACATAATGGAATGATGA
CAAACATTTGTCTGTCTCTGCCCCTCCATTTATAAATTTACCAACCCTtt
acttttagaaaaattttttgtGTTATGACAGTACAGTGTACAAAATCTAC
AGAGAATATTTTTAAGCTACTCAGAATAGTGGGGTTTTCTTTatgaagaa
ataaaataaatgaaacaaaactttaaaatttagaTGATAGAAAAACATAT
CATCCCATGCTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026455XLOC_026455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042641-exon-sc0003566-1491911889:9703..10516TCONS_00042641-exon-sc0003566-1491911889:9703..10516Clytia hemisphaericaexon
TCONS_00042641-exon-sc0003566-1510915933:9703..10516TCONS_00042641-exon-sc0003566-1510915933:9703..10516Clytia hemisphaericaexon
TCONS_00042641-exon-sc0003566-1575043694:9703..10516TCONS_00042641-exon-sc0003566-1575043694:9703..10516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003566supercontigsc0003566:9703..10516 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0586409	0	0	0	0.0790805	0.0624905	0	0.141162	0	0.122418	0	0.117164	0.195001	0.243013	0	0.0714682	0	0.135362	0	0	0.113395	0	0	0	0	0.168571	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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