TCONS_00042639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042639
Unique NameTCONS_00042639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1069

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042639 ID=TCONS_00042639|Name=TCONS_00042639|organism=Clytia hemisphaerica|type=transcript|length=1069bp
AAAATAAACGGCAGAACGATTTGATTATACGATCGAtatgaaaaatttac
ttttttatgaaatatacaCAAATTCTTTCTAATTGTAAAAAGCAAgaata
aaatattcaaaaatgtaGATATGAATTATCTTTGTGTATAGCACGTCCCA
GTAAAGCAGTATTACgaaggaaaaaaattacaagacTTTAATACAAAAAG
GTAGGATTTCCCATGCTTCCTTCTATTtgaaatacatattttttataagc
aatcaggTTGTTAAGGAGGGCCGATTGtttcactatctcgtaaagtaaaa
gcttttcagATAATCTAAGCATAGCAAACGATAGCCCTGGGCCAAATAAA
GATAAacatggtataatatcaggggtggtcagagcaaatatttttcagaa
aatgagctggAATGCTAAGCAACCATAGCCATGTTCTGAAAATAAGAGTT
gcttaaaaaaatcaagttcacATACCGTAAAGTTCTCATAAAGTCACATA
ACACTCTAATGGGTTGTGCTATCACATAATTTAAATGTCTATAAAGTCAC
ATTAACAAAGTCTGGGCATAGTCTAAAAGGTTTTACTTTATGTTGTTGAC
AGACTAGTTGACAATGGTTGATAAAAAACAACCTACATCTCTGATAATCT
AATAGACCTTTGCTAGTTAGGATGTTATGTTGATCTATAATTAAAAATCC
AgtataaagaaaataattatgCATTAATGTGTCATTGTTTAATTGCCTGA
GTTTTTAATTATTCAACATGACATCATGCCTAACAAAAGGTCTATAACAG
CCAATACCAAGCTCAGCACAACGATTATGGATACGCCCATCACAACAGCT
TCCGTTTAACCTCCTTTGGTTTTACCTTCCAAAATGTCTTTGGCTTCATT
GATTTTGGATGCAAGGTATGGTGATCCACCTTTGTCAGGGTGATTAACAA
TCATGATACGACGGTGCGAGTCACGTATACGTTGAAGATTTGCACTCTGA
CTGACTCCTTTAAAGTAAGAAATTCGAGAATCAGTATACAACAAAACATG
GATCTTTTGATATTTTTAA
Run BLAST on NCBI

transcript from alignment at sc0003564:2591..3659

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042639 ID=TCONS_00042639|Name=TCONS_00042639|organism=Clytia hemisphaerica|type=transcript|length=1069bp|location=Sequence derived from alignment at sc0003564:2591..3659 (Clytia hemisphaerica)
TTAAAAATATCAAAAGATCCATGTTTTGTTGTATACTGATTCTCGAATTT
CTTACTTTAAAGGAGTCAGTCAGAGTGCAAATCTTCAACGTATACGTGAC
TCGCACCGTCGTATCATGATTGTTAATCACCCTGACAAAGGTGGATCACC
ATACCTTGCATCCAAAATCAATGAAGCCAAAGACATTTTGGAAGGTAAAA
CCAAAGGAGGTTAAACGGAAGCTGTTGTGATGGGCGTATCCATAATCGTT
GTGCTGAGCTTGGTATTGGCTGTTATAGACCTTTTGTTAGGCATGATGTC
ATGTTGAATAATTAAAAACTCAGGCAATTAAACAATGACACATTAATGca
taattattttctttatacTGGATTTTTAATTATAGATCAACATAACATCC
TAACTAGCAAAGGTCTATTAGATTATCAGAGATGTAGGTTGTTTTTTATC
AACCATTGTCAACTAGTCTGTCAACAACATAAAGTAAAACCTTTTAGACT
ATGCCCAGACTTTGTTAATGTGACTTTATAGACATTTAAATTATGTGATA
GCACAACCCATTAGAGTGTTATGTGACTTTATGAGAACTTTACGGTATgt
gaacttgatttttttaagcAACTCTTATTTTCAGAACATGGCTATGGTTG
CTTAGCATTccagctcattttctgaaaaatatttgctctgaccacccctg
atattataccatgtTTATCTTTATTTGGCCCAGGGCTATCGTTTGCTATG
CTTAGATTATctgaaaagcttttactttacgagatagtgaaaCAATCGGC
CCTCCTTAACAAcctgattgcttataaaaaatatgtatttcaAATAGAAG
GAAGCATGGGAAATCCTACCTTTTTGTATTAAAgtcttgtaatttttttc
cttcGTAATACTGCTTTACTGGGACGTGCTATACACAAAGATAATTCATA
TCtacatttttgaatattttattcTTGCTTTTTACAATTAGAAAGAATTT
GtgtatatttcataaaaaagtaaatttttcataTCGATCGTATAATCAAA
TCGTTCTGCCGTTTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026453XLOC_026453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042639-exon-sc0003564-1491911889:2591..3659TCONS_00042639-exon-sc0003564-1491911889:2591..3659Clytia hemisphaericaexon
TCONS_00042639-exon-sc0003564-1510915933:2591..3659TCONS_00042639-exon-sc0003564-1510915933:2591..3659Clytia hemisphaericaexon
TCONS_00042639-exon-sc0003564-1575043694:2591..3659TCONS_00042639-exon-sc0003564-1575043694:2591..3659Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003564supercontigsc0003564:2591..3659 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.1759	28.5219	12.4713	12.8867	30.097	19.6068	26.9961	27.1106	15.4001	14.2959	15.5477	11.8689	10.2611	11.8245	7.8005	9.07501	16.0108	14.3473	8.77061	8.76481	27.4814	23.0541	32.9209	30.2739	13.9962	17.9858	28.2266	21.914	21.3371	21.8791
Blast
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BLAST of TCONS_00042639 vs. Swiss-Prot (Human)
Match: TIM14 (Mitochondrial import inner membrane translocase subunit TIM14 OS=Homo sapiens GN=DNAJC19 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 9.213e-19
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = -2 
Query:  865 GVSQSANLQRIRDSHRRIMIVNHPDKGGSPYLASKINEAKDILEGKTK 1008
            GVS +AN  +IRD+HRRIM++NHPDKGGSPY+A+KINEAKD+LEG+ K
Sbjct:   68 GVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAK 115
The following BLAST results are available for this feature:
BLAST of TCONS_00042639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIM149.213e-1972.92Mitochondrial import inner membrane translocase su... [more]
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