TCONS_00042638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042638
Unique NameTCONS_00042638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042638 ID=TCONS_00042638|Name=TCONS_00042638|organism=Clytia hemisphaerica|type=transcript|length=874bp
TGCTGCCTTATAAAAGAAGAATCTTTTTGTTCCATTTGTTTTAAAAGTCC
ATCAGCgctggaaatttttaaaatcaataaaataaaaaaatttccgaccG
ACTGTCCTCCAAAActtagggtcgggtgacggcaaaccaacattttttta
GTCCAGCTTTATTTTAACTTGAACACAAGTTTcgtgaaaaaaagtaaaaa
tactaAAACTCTTACAATAAATCCTATATTGTGATAACATATGTGAGCTA
ATAAATTaggttaaaaaaaatgaagttgcAATCATAAATCGATCAAGAAT
TGCTATATATATCCTTAAGTGTGATTTACACATGCCAGCTGACACAAAAA
TCGTTAGACCAAAACCTGTGAACAGTttaaaaatgctgacatcaattttt
tgaagacGTTACATTGAAGTTTGATACTGAAATTCATTCAAGATTGATGC
TGAAAATGACGTTGATTTTTGTGTCAGCCGACAAAATCGGCTGAGGGTTG
ATCCATAAGAATTAATTGTACAAATTTATTGACCACGTCATTAATGATGA
TAACAtgatttttgataattattttgttttagataAGTATTGCAAAAACT
CAATCTGATTGAATGAAGAAAACTAAGGTTACAATCATATGGTGTTGTGG
GTTGATCCACGAGAATTTATTGTTTATAGCTGTACTGAATGTGAGTAAAA
TTCTGAATGATTTAAGAGCTGACGTTTTGGATCTTGCGAAAAGTCAAACT
GATTGAATGAAGAAAACATTACCATAGGtttaaaaactaattttgaattt
tttcgacAAAATTTTTACCGACCAACTGACTAACTCGTATTTTTAttgta
caattttgaaaaaatctttttcaa
Run BLAST on NCBI

transcript from alignment at sc0003563:10074..10947

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042638 ID=TCONS_00042638|Name=TCONS_00042638|organism=Clytia hemisphaerica|type=transcript|length=874bp|location=Sequence derived from alignment at sc0003563:10074..10947 (Clytia hemisphaerica)
ttgaaaaagattttttcaaaattgtacaaTAAAAATACGAGTTAGTCAGT
TGGTCGGTAAAAATTTTgtcgaaaaaattcaaaattagtttttaaaCCTA
TGGTAATGTTTTCTTCATTCAATCAGTTTGACTTTTCGCAAGATCCAAAA
CGTCAGCTCTTAAATCATTCAGAATTTTACTCACATTCAGTACAGCTATA
AACAATAAATTCTCGTGGATCAACCCACAACACCATATGATTGTAACCTT
AGTTTTCTTCATTCAATCAGATTGAGTTTTTGCAATACTtatctaaaaca
aaataattatcaaaaatcaTGTTATCATCATTAATGACGTGGTCAATAAA
TTTGTACAATTAATTCTTATGGATCAACCCTCAGCCGATTTTGTCGGCTG
ACACAAAAATCAACGTCATTTTCAGCATCAATCTTGAATGAATTTCAGTA
TCAAACTTCAATGTAACgtcttcaaaaaattgatgtcagcatttttaaAC
TGTTCACAGGTTTTGGTCTAACGATTTTTGTGTCAGCTGGCATGTGTAAA
TCACACTTAAGGATATATATAGCAATTCTTGATCGATTTATGATTgcaac
ttcattttttttaacctAATTTATTAGCTCACATATGTTATCACAATATA
GGATTTATTGTAAGAGTTTtagtatttttactttttttcacgAAACTTGT
GTTCAAGTTAAAATAAAGCTGGACtaaaaaaatgttggtttgccgtcacc
cgaccctaagTTTTGGAGGACAGTCggtcggaaatttttttattttattg
attttaaaaatttccagcGCTGATGGACTTTTAAAACAAATGGAACAAAA
AGATTCTTCTTTTATAAGGCAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026452XLOC_026452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042638-exon-sc0003563-1491911889:10074..10947TCONS_00042638-exon-sc0003563-1491911889:10074..10947Clytia hemisphaericaexon
TCONS_00042638-exon-sc0003563-1510915933:10074..10947TCONS_00042638-exon-sc0003563-1510915933:10074..10947Clytia hemisphaericaexon
TCONS_00042638-exon-sc0003563-1575043694:10074..10947TCONS_00042638-exon-sc0003563-1575043694:10074..10947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003563supercontigsc0003563:10074..10947 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2804	1.50871	1.0873	0.945559	1.36696	0.682227	0.754488	1.41269	0.674355	0.556865	0.432406	0.319777	0.603184	0.405326	0.333233	0.52016	0.520645	0.328397	0	0.118691	0.618982	0.603835	1.16223	0.722962	0.171839	0.613447	0.21946	0.0780713	0.769786	0.54297
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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