TCONS_00042637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042637
Unique NameTCONS_00042637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042637 ID=TCONS_00042637|Name=TCONS_00042637|organism=Clytia hemisphaerica|type=transcript|length=568bp
CGACGACGGAGAAACGATTTCGCCGGACAACGACGACGACAACGGAGCAA
CGATTTTGGTTTGAAGGGAGGAAAAGGTCCTCAAATTACCATCAAATGGC
TTGCTTttaacaatctttgaaaattggGCGTCGGCTTTCTCAGGTACGTT
ATGTTTCAGGACCACAGAATCGTAAATAAAGCCATTAACATTCTTCTGTT
TTTCCACATTAATGATGTcgcgttttggcttaaaaaataaAGGTATAATT
GTTTTAGAACTTGGTACCACTtgtagtagagggcattttgtaaaatcgct
agACTGTTATTGTttcgtttttggcattttcaaaaaagctaaattttgat
tggggtaacttggagatctgaaattttcacaggatgttaGTAGTGATGTA
AGGAACCCAAAAAgttctttttccaaaattctaGCTGTTTAGCACCTATT
TTTCCATTGACAATAAGTGCCAAAATACCAAAGTAAAAGGCTTGATTGGG
TATAAGACTCCCATAACTTCTTTTGAAATAGTTGAATAATCAAGTTATAA
ACACCAATATAACAATTG
Run BLAST on NCBI

transcript from alignment at sc0003563:6575..7142

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042637 ID=TCONS_00042637|Name=TCONS_00042637|organism=Clytia hemisphaerica|type=transcript|length=568bp|location=Sequence derived from alignment at sc0003563:6575..7142 (Clytia hemisphaerica)
CAATTGTTATATTGGTGTTTATAACTTGATTATTCAACTATTTCAAAAGA
AGTTATGGGAGTCTTATACCCAATCAAGCCTTTTACTTTGGTATTTTGGC
ACTTATTGTCAATGGAAAAATAGGTGCTAAACAGCtagaattttggaaaa
agaacTTTTTGGGTTCCTTACATCACTACtaacatcctgtgaaaatttca
gatctccaagttaccccaatcaaaatttagcttttttgaaaatgccaaaa
acgaaACAATAACAGTctagcgattttacaaaatgccctctactacaAGT
GGTACCAAGTTCTAAAACAATTATACCTttattttttaagccaaaacgcg
ACATCATTAATGTGGAAAAACAGAAGAATGTTAATGGCTTTATTTACGAT
TCTGTGGTCCTGAAACATAACGTACCTGAGAAAGCCGACGCccaattttc
aaagattgttaaAAGCAAGCCATTTGATGGTAATTTGAGGACCTTTTCCT
CCCTTCAAACCAAAATCGTTGCTCCGTTGTCGTCGTCGTTGTCCGGCGAA
ATCGTTTCTCCGTCGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026451XLOC_026451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042637-exon-sc0003563-1491911889:6575..7142TCONS_00042637-exon-sc0003563-1491911889:6575..7142Clytia hemisphaericaexon
TCONS_00042637-exon-sc0003563-1510915933:6575..7142TCONS_00042637-exon-sc0003563-1510915933:6575..7142Clytia hemisphaericaexon
TCONS_00042637-exon-sc0003563-1575043694:6575..7142TCONS_00042637-exon-sc0003563-1575043694:6575..7142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003563supercontigsc0003563:6575..7142 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.514454	0.394501	0.341727	0.861836	4.24975	2.54915	1.65334	0.978526	0.785729	1.1843	0.712665	0.790312	0.419778	0.147942	0.286847	0.31574	1.17603	0.0760389	0.430388	0	0.416475	0.294745	0.381335	0.424341	1.11615	1.70449	0.27288	0.167468	0.25796	0.388605
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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