TCONS_00042636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042636
Unique NameTCONS_00042636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042636 ID=TCONS_00042636|Name=TCONS_00042636|organism=Clytia hemisphaerica|type=transcript|length=637bp
NNGAAATCAAGGCCGATTCCTTCCTCAAGTGAAAATGAAGGTTTCTTGGC
AGTGAATGCTTTTTTCCTATTGGTTGGAACTTCTTCAAACatgttttctt
tctttactTCCGGTTGTTGATCAAAGTAAAAGTACCAAGGATGCTTATTA
TTGATGTGTTTGCGCAATCCTCGAGCACTTTTGTAGTCAGCATGTAAACA
ATGTTTCAATAACGGACATGGAAACGAACCTTTGTTGTTTGGTCGAATTT
CCAGTTTTCTTCTTCCTTGCGCAGCACCATCTAGAGATTTCCAATCCACA
AGTAGATTTCGACTGACCTTCATGATCAATCTGTTTTTATGATTTCGGAA
TCATTTGCAGAGTTTTTATAGAGACAACAATCTCACATTATTGATAGGGG
GCTAAAACACTGAATTTGATTTGTCATATCTTAAGAATAAAAAGTTTCTC
CTTTGTTCAATGTTCAATTGTGTATTAGTTTACCCCCTGTTCCTTTTAGG
CCAATGAAAAATGACCGCCATTTTGTATCCACGTATCAATGTGCTCTCAC
TTAAATTTGCGCGCTAATGGTTTATGTAATAATTACGCAATAGAACGAAG
GCGTTGTTCCCTTTATAGATTGAACAAAATATGCCAG
Run BLAST on NCBI

protein sequence of TCONS_00042636-protein

>TCONS_00042636-protein ID=TCONS_00042636-protein|Name=TCONS_00042636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MKVSRNLLVDWKSLDGAAQGRRKLEIRPNNKGSFPCPLLKHCLHADYKSA
RGLRKHINNKHPWYFYFDQQPEVKKENMFEEVPTNRKKAFTAKKPSFSLE
EGIGLDF
Run BLAST on NCBI

transcript from alignment at sc0003562:290..926

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042636 ID=TCONS_00042636|Name=TCONS_00042636|organism=Clytia hemisphaerica|type=transcript|length=637bp|location=Sequence derived from alignment at sc0003562:290..926 (Clytia hemisphaerica)
CTGGCATATTTTGTTCAATCTATAAAGGGAACAACGCCTTCGTTCTATTG
CGTAATTATTACATAAACCATTAGCGCGCAAATTTAAGTGAGAGCACATT
GATACGTGGATACAAAATGGCGGTCATTTTTCATTGGCCTAAAAGGAACA
GGGGGTAAACTAATACACAATTGAACATTGAACAAAGGAGAAACTTTTTA
TTCTTAAGATATGACAAATCAAATTCAGTGTTTTAGCCCCCTATCAATAA
TGTGAGATTGTTGTCTCTATAAAAACTCTGCAAATGATTCCGAAATCATA
AAAACAGATTGATCATGAAGGTCAGTCGAAATCTACTTGTGGATTGGAAA
TCTCTAGATGGTGCTGCGCAAGGAAGAAGAAAACTGGAAATTCGACCAAA
CAACAAAGGTTCGTTTCCATGTCCGTTATTGAAACATTGTTTACATGCTG
ACTACAAAAGTGCTCGAGGATTGCGCAAACACATCAATAATAAGCATCCT
TGGTACTTTTACTTTGATCAACAACCGGAagtaaagaaagaaaacatGTT
TGAAGAAGTTCCAACCAATAGGAAAAAAGCATTCACTGCCAAGAAACCTT
CATTTTCACTTGAGGAAGGAATCGGCCTTGATTTCNN

Coding sequence (CDS) from alignment at sc0003562:290..926

>TCONS_00042636 ID=TCONS_00042636|Name=TCONS_00042636|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0003562:290..926 (Clytia hemisphaerica)
ATGAAGGTCAGTCGAAATCTACTTGTGGATTGGAAATCTCTAGATGGTGC
TGCGCAAGGAAGAAGAAAACTGGAAATTCGACCAAACAACAAAGGTTCGT
TTCCATGTCCGTTATTGAAACATTGTTTACATGCTGACTACAAAAGTGCT
CGAGGATTGCGCAAACACATCAATAATAAGCATCCTTGGTACTTTTACTT
TGATCAACAACCGGAagtaaagaaagaaaacatGTTTGAAGAAGTTCCAA
CCAATAGGAAAAAAGCATTCACTGCCAAGAAACCTTCATTTTCACTTGAG
GAAGGAATCGGCCTTGATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026450XLOC_026450Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042636-proteinTCONS_00042636-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042636-exon-sc0003562-1491911889:290..926TCONS_00042636-exon-sc0003562-1491911889:290..926Clytia hemisphaericaexon
TCONS_00042636-exon-sc0003562-1510915933:290..926TCONS_00042636-exon-sc0003562-1510915933:290..926Clytia hemisphaericaexon
TCONS_00042636-exon-sc0003562-1575043694:290..926TCONS_00042636-exon-sc0003562-1575043694:290..926Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003562supercontigsc0003562:290..926 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22873	2.02082	3.00334	2.7635	1.85704	0.883335	0.426283	0.518476	0.48896	0.605656	0	1.13296	0.496159	0.801525	0.282413	0.151536	0.435587	0.0637803	0.528696	0.764169	0.400723	1.22856	0.190084	0.345629	0.266992	0.555996	0.340984	0.242605	1.15389	1.74774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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