TCONS_00042634 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042634
Unique NameTCONS_00042634
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042634 ID=TCONS_00042634|Name=TCONS_00042634|organism=Clytia hemisphaerica|type=transcript|length=605bp
NTTGAGAGTGATGTCTTCTGATGGTTTGATCTTTCCTCTGATGATGGTGG
TTTTGTTGCATTTATCGATCCCAAACTGCATGCATATGTCATCACTAAAG
GTTTTGACGATAGCAATCATTTGACGCAGTTGTTGGTCGTTTGATGCATA
CAGCTTGAGATCGTCCATGAATAGCAGGTGGGATATGGTGTTGTTGGCGA
ATCTGTATCCGAGGTTCGATCGTTTTAACAACCATGACAATGGTAGCAGG
GACATGATGAACAACATTCCGGACGGGCTGTCTCCCTGGAATATGCCGGT
GTTGATTGGAAATTCGTTTGTCGTAATCGTGCTTTCGTGAAATGGAAGTG
TGATTGAAGTTTTCCATTCTTTCATGGTTGTTTCGATAAAACTGATGGTT
GTCGAATCGAATTTATGCATCTTCAGGACATTGATGATCCAATCATGCGG
GACGGAGTCGTACGCTTTTCGATAATCGATCCACGCCGTAGATATATTAC
GCTTCTTGACTTTGGCGCTCTCCATAATCATCTTGTTGATTATCAGTTGG
TCGATTGTGCCGAAGGTATTGCTGGCGTTGCCTTTCTGCTCTTCAGGTAT
CAAGT
Run BLAST on NCBI

protein sequence of TCONS_00042634-protein

>TCONS_00042634-protein ID=TCONS_00042634-protein|Name=TCONS_00042634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
LIPEEQKGNASNTFGTIDQLIINKMIMESAKVKKRNISTAWIDYRKAYDS
VPHDWIINVLKMHKFDSTTISFIETTMKEWKTSITLPFHESTITTNEFPI
NTGIFQGDSPSGMLFIMSLLPLSWLLKRSNLGYRFANNTISHLLFMDDLK
LYASNDQQLRQMIAIVKTFSDDICMQFGIDKCNKTTIIRGKIKPSEDITL
X
Run BLAST on NCBI

transcript from alignment at sc0003560:7720..8324

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042634 ID=TCONS_00042634|Name=TCONS_00042634|organism=Clytia hemisphaerica|type=transcript|length=605bp|location=Sequence derived from alignment at sc0003560:7720..8324 (Clytia hemisphaerica)
ACTTGATACCTGAAGAGCAGAAAGGCAACGCCAGCAATACCTTCGGCACA
ATCGACCAACTGATAATCAACAAGATGATTATGGAGAGCGCCAAAGTCAA
GAAGCGTAATATATCTACGGCGTGGATCGATTATCGAAAAGCGTACGACT
CCGTCCCGCATGATTGGATCATCAATGTCCTGAAGATGCATAAATTCGAT
TCGACAACCATCAGTTTTATCGAAACAACCATGAAAGAATGGAAAACTTC
AATCACACTTCCATTTCACGAAAGCACGATTACGACAAACGAATTTCCAA
TCAACACCGGCATATTCCAGGGAGACAGCCCGTCCGGAATGTTGTTCATC
ATGTCCCTGCTACCATTGTCATGGTTGTTAAAACGATCGAACCTCGGATA
CAGATTCGCCAACAACACCATATCCCACCTGCTATTCATGGACGATCTCA
AGCTGTATGCATCAAACGACCAACAACTGCGTCAAATGATTGCTATCGTC
AAAACCTTTAGTGATGACATATGCATGCAGTTTGGGATCGATAAATGCAA
CAAAACCACCATCATCAGAGGAAAGATCAAACCATCAGAAGACATCACTC
TCAAN

Coding sequence (CDS) from alignment at sc0003560:7720..8324

>TCONS_00042634 ID=TCONS_00042634|Name=TCONS_00042634|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0003560:7720..8324 (Clytia hemisphaerica)
TTGATACCTGAAGAGCAGAAAGGCAACGCCAGCAATACCTTCGGCACAAT
CGACCAACTGATAATCAACAAGATGATTATGGAGAGCGCCAAAGTCAAGA
AGCGTAATATATCTACGGCGTGGATCGATTATCGAAAAGCGTACGACTCC
GTCCCGCATGATTGGATCATCAATGTCCTGAAGATGCATAAATTCGATTC
GACAACCATCAGTTTTATCGAAACAACCATGAAAGAATGGAAAACTTCAA
TCACACTTCCATTTCACGAAAGCACGATTACGACAAACGAATTTCCAATC
AACACCGGCATATTCCAGGGAGACAGCCCGTCCGGAATGTTGTTCATCAT
GTCCCTGCTACCATTGTCATGGTTGTTAAAACGATCGAACCTCGGATACA
GATTCGCCAACAACACCATATCCCACCTGCTATTCATGGACGATCTCAAG
CTGTATGCATCAAACGACCAACAACTGCGTCAAATGATTGCTATCGTCAA
AACCTTTAGTGATGACATATGCATGCAGTTTGGGATCGATAAATGCAACA
AAACCACCATCATCAGAGGAAAGATCAAACCATCAGAAGACATCACTCTC
AAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026448XLOC_026448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042634-exon-sc0003560-1491911889:7720..8324TCONS_00042634-exon-sc0003560-1491911889:7720..8324Clytia hemisphaericaexon
TCONS_00042634-exon-sc0003560-1510915933:7720..8324TCONS_00042634-exon-sc0003560-1510915933:7720..8324Clytia hemisphaericaexon
TCONS_00042634-exon-sc0003560-1575043694:7720..8324TCONS_00042634-exon-sc0003560-1575043694:7720..8324Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042634-proteinTCONS_00042634-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003560supercontigsc0003560:7720..8324 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.537542	0.524188	0.710071	0.198484	0.120817	1.24113	0.575912	1.07832	0.075496	1.02865	0.816902	0.358	0.476669	0.123756	0.109688	0.218375	0.0672551	0.275737	0.0952364	0.398632	0.259863	0.507008	0.102722	0.0933896	3.65519	2.59136	0.61423	0	0.198876	0.101312
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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