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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042633 ID=TCONS_00042633|Name=TCONS_00042633|organism=Clytia hemisphaerica|type=transcript|length=1722bp
ATAAATGTGTAAGAAATAGGataattttcaatgtttgtaaATAGCTTGTC
AAGTGTACGTACGTGTATGCAGTGTATGTGGAAAGTGTTTTTAGTAAGTA
GAATTTCTATATTTCTTGTGTTAAATATTTCTTGACTTTTGTGCCTTAGc
ttcttgtattttacatgaaACTCTTGTACTTATTCATCTTTTCCTAACCT
TGTGTTTTATATCTATTTTGTAGCCGTTACTTCGAGAAAGAACGCGTTTG
AAAACCAATCCACATTTATGTTTCGTCCCTAAATGTCGAAATGTTTGGAG
CGACATTTATAGTAAAAACACTGACGTGCACTGTGTATGTTGACAGCTTT
GTATGATTGTATATTGGATGCTAGAAGTTGATCAGTTTGCTTCGAGATCA
AAAGAATCGGAACTGAAATAAAGATGGCCAATCACCCAATTCATGGATTT
AATAATGAACGTTTCAAGTTGGTCGAATTATTGATCGAGTCGACAAGATT
TTTAAAACGTGTGTACAGTGGTGTCAATCCTGATCCGGAACTTGACCCAA
TTATTCATCAACATGAATCGAAACGACTTACAGGTTTGGCAAATGATTTT
AAATTACTTTATGACAGAAATTACTCACTGATGCTCTCGATGTACGGAGA
AAAGGAAACACAAAAGGAATTTGCAGTTCGAGATGTTATAGATTCAGCAC
CCCTTAGTTTCAAGAAGGTGAAAGTAGTTCCAAAGTTGGATCGTGTTGAA
TGTAGCATGGCCGTAAGTTATCCTTATCCGCAAATTTTGGTAGTTTCTCC
AGTTGTTGATAGAGCTGTTTGTCGCGTGGTTACTAAAAGTTGTAAGCCCA
AAATTGAGTCGCACATGGTCGAAAGTGTCCAGCCTTACCCTAAAGTCAGT
GTTGTTTCTGAAGTAGTCAAAAATGTTCAAGTGACTATTGGAAAGccaaa
acaagaaattttgTCTCGCGTGGTCGAGAGTGTCGAGTCGTATTCCAATG
TCGTCGTCGTTACTGAAGTGCCCGAAAATCGTTGTCACGAGATCGTCCGA
AAAGTTAAACCGGAAATTTTGTCTCATCACATAGTTGTCAAAGAAGTTCA
ACCTCGTCGTGTTGCACGTATTGCAGAGAAGCTGAATGTTTCAATGTTAA
ATGTGAGTAGAAAATTTAAAGATACACGAACTTTCGATAATGAAACTCCT
CTCGTTTCCAAAAGATCAAAAGTGCATCCTATCGTCAGTTCCCCCAACCT
TGCAGTTTGCCTAAATGCCCGAAACTACAAACCAAAAAGGAAATGCAAAA
TTCAGTTGAAACGTTTTTTGGTAAATAACTTTTATTGCAAGCTGTTTTTG
AGAAGTTTTTGGACGTTCTTCCTTTTGTCAGATTTTCAAAAGGTTGTTAT
TGGCTATCCCCGTTGGACTTACGTTTCGTTATCTGGACTAATCAATGGGT
TAATNGGTTGTTATTGGCTATCCCCGTTTGACTTACGTTTCGTTGTCTGG
ACTAATCAATGGGTTAATCCCGAATGTGGTTTTATATTTGCTTACAGTTA
TGAGTACTGGGTACCAGTTTGGTCAAGATGCCAATATCTTAACGGTGGGG
AGTGTTACTGCCGCTAGGCAGTAGTTTTGGTTAGATTATTTTTACATTTC
CTTTGTACTATAGCATTTGCATTTTGTATAGGTTTATTGGTTTGTTATTA
TATTTTGGATGTCTCTTGTGTA Run BLAST on NCBI protein sequence of TCONS_00042633-protein >TCONS_00042633-protein ID=TCONS_00042633-protein|Name=TCONS_00042633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
MANHPIHGFNNERFKLVELLIESTRFLKRVYSGVNPDPELDPIIHQHESK
RLTGLANDFKLLYDRNYSLMLSMYGEKETQKEFAVRDVIDSAPLSFKKVK
VVPKLDRVECSMAVSYPYPQILVVSPVVDRAVCRVVTKSCKPKIESHMVE
SVQPYPKVSVVSEVVKNVQVTIGKPKQEILSRVVESVESYSNVVVVTEVP
ENRCHEIVRKVKPEILSHHIVVKEVQPRRVARIAEKLNVSMLNVSRKFKD
TRTFDNETPLVSKRSKVHPIVSSPNLAVCLNARNYKPKRKCKIQLKRFLV
NNFYCKLFLRSFWTFFLLSDFQKVVIGYPRWTYVSLSGLINGLXGCYWLS
PFDLRFVVWTNQWVNPECGFIFAYSYEYWVPVWSRCQYLNGGECYCR Run BLAST on NCBI transcript from alignment at sc0003560:8..1729 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042633 ID=TCONS_00042633|Name=TCONS_00042633|organism=Clytia hemisphaerica|type=transcript|length=1722bp|location=Sequence derived from alignment at sc0003560:8..1729 (Clytia hemisphaerica)
TACACAAGAGACATCCAAAATATAATAACAAACCAATAAACCTATACAAA
ATGCAAATGCTATAGTACAAAGGAAATGTAAAAATAATCTAACCAAAACT
ACTGCCTAGCGGCAGTAACACTCCCCACCGTTAAGATATTGGCATCTTGA
CCAAACTGGTACCCAGTACTCATAACTGTAAGCAAATATAAAACCACATT
CGGGATTAACCCATTGATTAGTCCAGACAACGAAACGTAAGTCAAACGGG
GATAGCCAATAACAACCNATTAACCCATTGATTAGTCCAGATAACGAAAC
GTAAGTCCAACGGGGATAGCCAATAACAACCTTTTGAAAATCTGACAAAA
GGAAGAACGTCCAAAAACTTCTCAAAAACAGCTTGCAATAAAAGTTATTT
ACCAAAAAACGTTTCAACTGAATTTTGCATTTCCTTTTTGGTTTGTAGTT
TCGGGCATTTAGGCAAACTGCAAGGTTGGGGGAACTGACGATAGGATGCA
CTTTTGATCTTTTGGAAACGAGAGGAGTTTCATTATCGAAAGTTCGTGTA
TCTTTAAATTTTCTACTCACATTTAACATTGAAACATTCAGCTTCTCTGC
AATACGTGCAACACGACGAGGTTGAACTTCTTTGACAACTATGTGATGAG
ACAAAATTTCCGGTTTAACTTTTCGGACGATCTCGTGACAACGATTTTCG
GGCACTTCAGTAACGACGACGACATTGGAATACGACTCGACACTCTCGAC
CACGCGAGAcaaaatttcttgttttggCTTTCCAATAGTCACTTGAACAT
TTTTGACTACTTCAGAAACAACACTGACTTTAGGGTAAGGCTGGACACTT
TCGACCATGTGCGACTCAATTTTGGGCTTACAACTTTTAGTAACCACGCG
ACAAACAGCTCTATCAACAACTGGAGAAACTACCAAAATTTGCGGATAAG
GATAACTTACGGCCATGCTACATTCAACACGATCCAACTTTGGAACTACT
TTCACCTTCTTGAAACTAAGGGGTGCTGAATCTATAACATCTCGAACTGC
AAATTCCTTTTGTGTTTCCTTTTCTCCGTACATCGAGAGCATCAGTGAGT
AATTTCTGTCATAAAGTAATTTAAAATCATTTGCCAAACCTGTAAGTCGT
TTCGATTCATGTTGATGAATAATTGGGTCAAGTTCCGGATCAGGATTGAC
ACCACTGTACACACGTTTTAAAAATCTTGTCGACTCGATCAATAATTCGA
CCAACTTGAAACGTTCATTATTAAATCCATGAATTGGGTGATTGGCCATC
TTTATTTCAGTTCCGATTCTTTTGATCTCGAAGCAAACTGATCAACTTCT
AGCATCCAATATACAATCATACAAAGCTGTCAACATACACAGTGCACGTC
AGTGTTTTTACTATAAATGTCGCTCCAAACATTTCGACATTTAGGGACGA
AACATAAATGTGGATTGGTTTTCAAACGCGTTCTTTCTCGAAGTAACGGC
TACAAAATAGATATAAAACACAAGGTTAGGAAAAGATGAATAAGTACAAG
AGTttcatgtaaaatacaagaagCTAAGGCACAAAAGTCAAGAAATATTT
AACACAAGAAATATAGAAATTCTACTTACTAAAAACACTTTCCACATACA
CTGCATACACGTACGTACACTTGACAAGCTATttacaaacattgaaaatt
atCCTATTTCTTACACATTTAT Coding sequence (CDS) from alignment at sc0003560:8..1729 >TCONS_00042633 ID=TCONS_00042633|Name=TCONS_00042633|organism=Clytia hemisphaerica|type=CDS|length=1194bp|location=Sequence derived from alignment at sc0003560:8..1729 (Clytia hemisphaerica)
CTAGCGGCAGTAACACTCCCCACCGTTAAGATATTGGCATCTTGACCAAA
CTGGTACCCAGTACTCATAACTGTAAGCAAATATAAAACCACATTCGGGA
TTAACCCATTGATTAGTCCAGACAACGAAACGTAAGTCAAACGGGGATAG
CCAATAACAACCNATTAACCCATTGATTAGTCCAGATAACGAAACGTAAG
TCCAACGGGGATAGCCAATAACAACCTTTTGAAAATCTGACAAAAGGAAG
AACGTCCAAAAACTTCTCAAAAACAGCTTGCAATAAAAGTTATTTACCAA
AAAACGTTTCAACTGAATTTTGCATTTCCTTTTTGGTTTGTAGTTTCGGG
CATTTAGGCAAACTGCAAGGTTGGGGGAACTGACGATAGGATGCACTTTT
GATCTTTTGGAAACGAGAGGAGTTTCATTATCGAAAGTTCGTGTATCTTT
AAATTTTCTACTCACATTTAACATTGAAACATTCAGCTTCTCTGCAATAC
GTGCAACACGACGAGGTTGAACTTCTTTGACAACTATGTGATGAGACAAA
ATTTCCGGTTTAACTTTTCGGACGATCTCGTGACAACGATTTTCGGGCAC
TTCAGTAACGACGACGACATTGGAATACGACTCGACACTCTCGACCACGC
GAGAcaaaatttcttgttttggCTTTCCAATAGTCACTTGAACATTTTTG
ACTACTTCAGAAACAACACTGACTTTAGGGTAAGGCTGGACACTTTCGAC
CATGTGCGACTCAATTTTGGGCTTACAACTTTTAGTAACCACGCGACAAA
CAGCTCTATCAACAACTGGAGAAACTACCAAAATTTGCGGATAAGGATAA
CTTACGGCCATGCTACATTCAACACGATCCAACTTTGGAACTACTTTCAC
CTTCTTGAAACTAAGGGGTGCTGAATCTATAACATCTCGAACTGCAAATT
CCTTTTGTGTTTCCTTTTCTCCGTACATCGAGAGCATCAGTGAGTAATTT
CTGTCATAAAGTAATTTAAAATCATTTGCCAAACCTGTAAGTCGTTTCGA
TTCATGTTGATGAATAATTGGGTCAAGTTCCGGATCAGGATTGACACCAC
TGTACACACGTTTTAAAAATCTTGTCGACTCGATCAATAATTCGACCAAC
TTGAAACGTTCATTATTAAATCCATGAATTGGGTGATTGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042633-exon-sc0003560-1491911889:8..1729 | TCONS_00042633-exon-sc0003560-1491911889:8..1729 | Clytia hemisphaerica | exon |
| TCONS_00042633-exon-sc0003560-1510915933:8..1729 | TCONS_00042633-exon-sc0003560-1510915933:8..1729 | Clytia hemisphaerica | exon |
| TCONS_00042633-exon-sc0003560-1575043694:8..1729 | TCONS_00042633-exon-sc0003560-1575043694:8..1729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003560 | supercontig | sc0003560:8..1729 . |
Blast
The following BLAST results are available for this feature:
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