TCONS_00042632 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042632
Unique NameTCONS_00042632
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1208

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042632 ID=TCONS_00042632|Name=TCONS_00042632|organism=Clytia hemisphaerica|type=transcript|length=1208bp
TTATCAAAGCATTTAAACATACAACCCATAGCACCAATAATGACTGGAGT
GATATTAACTTTTGACAATCGCCAGAGAGTTTTTATTTCGGTGGAGAGGT
CTGAGTATTTTCTTAGCTTCTCTAGGCGTTTTTGGGCAACACGGTAATCG
ATTGGGATGGCAACGTCAATTATGTTGGcggttttgttgattttgtctAT
GACAACGATGTCCGGTTTGTTGTATTGGATACGGTGGTCAGTTTGGATCG
GAAAGTTCCACAGTATCCTAACATGATCGTTCTGTTCGACAATTTTTGGT
TGATGTTGGTACCAGGGAATCACTTTATCGAGGATACCGTACTCGTTCAG
GAGAAGCATGTGGATGTACTTGCATACATTGTCGTGGCGTTCAAGATATT
TGGTGGGTGCTAAGGATTCGCAGCTGCTTATGATATGGTGGatcgtttct
ttttcttttcgacAAACTCTACAAATGTCTGATTCTTCCGTGTGGAAGAT
GTGCTTTTTGATATAATTTGTCGTTATCGCTTGTTCTTGTATTGCACATA
TGGCTGACTCGGTCGCACATTTAAGTGAAGCTGCAGTTAGCCAATGCATC
GAGGCTTGTTTGTCTATGTGTGGTTCGTCAAGAAGCTTAGCGTACTGCCC
GTGGAGATTTTTCGACTTTAGGGTTTCAACTTTCATATCAGTtcgtttat
ttttaattttgtttttccgTTGTTGTTTGTTGAGGGTAGACATTTGTTCA
ATTTCAAACTCGAGCTCCTGGCAGTAGATTTGTGCCCTTTCATGTATCGA
TTTTGCGTTTCTAGAGGTCTGCCAATCAGAAACCAAGTTGAGAAGGGCTT
CATTGGTTGATAGCAAATAGGTACTAAAATTGATGATCGAGTTTTTGAAG
TGTTCAGTTAAGTTTATCAGACCTCTACCACCCTCCTTTCTTGGGATGTA
TAATCTCGTTATGTCGCTTTGGCTGTGCATTGCGTGGAACGATTGCAGCA
TCTTGCGTGTCTCGCGGTCGATGATTTCAAGTTCAGTTATGGACCAATCC
AGTATTGGAAAGCCGTATGACAGTGCCGGTATTGCCCACATGTTGATGGC
GTTGATTAGATGTTTACTGGaaagttcactttttaataTCATTTTAAGTC
GGGAGAAATATTCCTTTTTCAATGACGATTTCGTTTCTTTATCAGTCGTA
AAATGTTC
Run BLAST on NCBI

transcript from alignment at sc0003560:8492..9762-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042632 ID=TCONS_00042632|Name=TCONS_00042632|organism=Clytia hemisphaerica|type=transcript|length=1271bp|location=Sequence derived from alignment at sc0003560:8492..9762- (Clytia hemisphaerica)
TTATCAAAGCATTTAAACATACAACCCATAGCACCAATAATGACTGGAGT
GATATTAACTTTTGACAATCGCCAGAGAGTTTTTATTTCGGTGGAGAGGT
CTGAGTATTTTCTTAGCTTCTCTAGGCGTTTTTGGGCAACACGGTAATCG
ATTGGGATGGCAACGTCAATTATGTTGGCGGTTTTGTTGATTTTGTCTAT
GACAACGATGTCCGGTTTGTTGTATTGGATACGGTGGTCAGTTTGGATCG
GAAAGTTCCACAGTATCCTAACATGATCGTTCTGTTCGACAATTTTTGGT
TGATGTTGGTACCAGGGAATCACTTTATCGAGGATACCGTACTCGTTCAG
GAGAAGCATGTGGATGTACTTGCATACATTGTCGTGGCGTTCAAGATATT
TGGTGGGTGCTAAGGATTCGCAGCTGCTTATGATATGGTGGATCGTTTCT
TTTTCTTTTCGACAAACTCTACAAATGTCTGATTCTTCCGTGTGGAAGAT
GTGCTTTTTGATATAATTTGTCGTTATCGCTTGTTCTTGTATTGCACATA
TGGCTGACTCGGTCGCACATTTAAGNTAATTTGTCGTTATCGCTTGTTCT
TGTATTGCACATATGGCTGATTCGGTCGCACATTTAAGTGAAGCTGCAGT
TAGCCAATGCATCGAGGCTTGTTTGTCTATGTGTGGTTCGTCAAGAAGCT
TAGCGTACTGCCCGTGGAGATTTTTCGACTTTAGGGTTTCAACTTTCATA
TCAGTTCGTTTATTTTTAATTTTGTTTTTCCGTTGTTGTTTGTTGAGGGT
AGACATTTGTTCAATTTCAAACTCGAGCTCCTGGCAGTAGATTTGTGCCC
TTTCATGTATCGATTTTGCGTTTCTAGAGGTCTGCCAATCAGAAACCAAG
TTGAGAAGGGCTTCATTGGTTGATAGCAAATAGGTACTAAAATTGATGAT
CGAGTTTTTGAAGTGTTCAGTTAAGTTTATCAGACCTCTACCACCCTCCT
TTCTTGGGATGTATAATCTCGTTATGTCGCTTTGGCTGTGCATTGCGTGG
AACGATTGCAGCATCTTGCGTGTCTCGCGGTCGATGATTTCAAGTTCAGT
TATGGACCAATCCAGTATTGGAAAGCCGTATGACAGTGCCGGTATTGCCC
ACATGTTGATGGCGTTGATTAGATGTTTACTGGAAAGTTCACTTTTTAAT
ATCATTTTAAGTCGGGAGAAATATTCCTTTTTCAATGACGATTTCGTTTC
TTTATCAGTCGTAAAATGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026446XLOC_026446Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042632-exon-sc0003560-1575043694:9195..9762TCONS_00042632-exon-sc0003560-1575043694:9195..9762Clytia hemisphaericaexon
TCONS_00042632-exon-sc0003560-1575043694:8492..9131TCONS_00042632-exon-sc0003560-1575043694:8492..9131Clytia hemisphaericaexon
TCONS_00042632-exon-sc0003560-1510915933:9195..9762TCONS_00042632-exon-sc0003560-1510915933:9195..9762Clytia hemisphaericaexon
TCONS_00042632-exon-sc0003560-1510915933:8492..9131TCONS_00042632-exon-sc0003560-1510915933:8492..9131Clytia hemisphaericaexon
TCONS_00042632-exon-sc0003560-1491911889:9195..9762TCONS_00042632-exon-sc0003560-1491911889:9195..9762Clytia hemisphaericaexon
TCONS_00042632-exon-sc0003560-1491911889:8492..9131TCONS_00042632-exon-sc0003560-1491911889:8492..9131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003560supercontigsc0003560:8492..9762 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.508157	0.472882	0.409769	0.238702	0.816809	0.593315	0.909253	1.27869	0.442508	0.615247	0.467736	0.334078	0.417631	0.315339	0.235389	0.299802	0.106639	0.412591	0.188757	0.498785	0.48992	0.488837	0.14014	0.148077	3.81841	2.42702	0.560747	0.529628	0.157668	0.198121
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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