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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042630 ID=TCONS_00042630|Name=TCONS_00042630|organism=Clytia hemisphaerica|type=transcript|length=1413bp
GGTGAAAGCTGTAATCATGTCATTGCAGCTCTTTATAAACTTGAGTTTGC
TAATGAATACATTAATTCGTTACCGTCAACAAGCCTTCCTTGTGGTTGGA
ACACACCAGCACGCACAGACTTCACCCCACAAAAAGTTATAAATATTGAT
TTTGTAAAACACCATACTGACAATAAAACCCCAAAACATAAATTGAATAA
TGACCGTGTACTTTATGATCCAAGACCCATCAAATATCGAGAGGTATCTG
ACGACAGAAAGGAATTTTATATCAATACCATTAGAAAAGAATTCCCAATG
GCTGTGATCAACAATTGTTTCACTCCTCCACCTAACCTTGACATGCCACC
TCCACTTCCAGTCATTGCAGAAAAAATTGTGAGTTCACATCATGATCATG
ACTTTTTTATCATACAAGaattcaactcaaaattatctttcaacGACTCT
CAATTAAATGAATTAGAAAAAGCAACACGATCCCAATCAAATTCTAACTG
CTGGTGGGAACAGCGTAAAGGAAGGATTACAGCatccaaattttacgaaa
ttaattcaaaaataaaatcgatGGCAAGgtcaaaaacaacgaaaatgaGT
AATATGGTTCTGTCCCTTTGTGAACCTAAAAAAGTTAGTGCAAAACCACT
AACTTGGGGCAGAACTAAAGAGAAAATTGCTTTAGAGGCATTCATGAAAG
TTGAGGGTATTAAACATAAACATggtaaacttctttcttctggTTTACAC
GTTTACAAAAGCAATCCGTATCTTGGTGCCACTCCAGACGGCATATTTAC
ATGCAAATGTAAGGATTGCGATGTTCGTGTATGCGTGGAAGTGAAATGTC
CATACAGTCTTAGAGAGAAATCCATCAGTGAAGGTGAAACTTATAGAGAA
CTAGGTTATTTAGAATTGAATGGCAATGAACTAAGACTGAAGAAGAACCA
TTCTTACTATGCCCAAGTGAATGGTCAAATGGCAATAACTGGTACACAAT
ATTCGTTTTTTGTGGTATGGACACCAAAAGGACCACCTCTCATTCTCAAA
GTTGCTTTTGACCAAGAGTATTGGTATGATATGCTACCCAACTTGAGTTT
ATTCTTTAAATCGTATATTTGTCCATATTTGCTAtgcatcaaaaagattt
ttcattgtCCTGTGTGCTCAGATATTTGTCTTAGTGAAGAggaaactgaa
aaagaagatgATAAATGTTTTGAATGTGAACAATGTTATTTGTGGTTTCA
CAACAAATGCTGTATTGagagagaaaataaaatttgtattttttgctaTG
ATAATGAGGAGTAATCCAGTGTACTTTTTGTATGATAATTCTTTaccgaa
atagaaaataaccaAGACAATAATTTAGTAATATCTTGAATAGGGAAAGA
AATAATGTAGTGC Run BLAST on NCBI protein sequence of TCONS_00042630-protein >TCONS_00042630-protein ID=TCONS_00042630-protein|Name=TCONS_00042630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
GESCNHVIAALYKLEFANEYINSLPSTSLPCGWNTPARTDFTPQKVINID
FVKHHTDNKTPKHKLNNDRVLYDPRPIKYREVSDDRKEFYINTIRKEFPM
AVINNCFTPPPNLDMPPPLPVIAEKIVSSHHDHDFFIIQEFNSKLSFNDS
QLNELEKATRSQSNSNCWWEQRKGRITASKFYEINSKIKSMARSKTTKMS
NMVLSLCEPKKVSAKPLTWGRTKEKIALEAFMKVEGIKHKHGKLLSSGLH
VYKSNPYLGATPDGIFTCKCKDCDVRVCVEVKCPYSLREKSISEGETYRE
LGYLELNGNELRLKKNHSYYAQVNGQMAITGTQYSFFVVWTPKGPPLILK
VAFDQEYWYDMLPNLSLFFKSYICPYLLCIKKIFHCPVCSDICLSEEETE
KEDDKCFECEQCYLWFHNKCCIERENKICIFCYDNEE Run BLAST on NCBI transcript from alignment at sc0003555:2709..4121 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042630 ID=TCONS_00042630|Name=TCONS_00042630|organism=Clytia hemisphaerica|type=transcript|length=1413bp|location=Sequence derived from alignment at sc0003555:2709..4121 (Clytia hemisphaerica)
GCACTACATTATTTCTTTCCCTATTCAAGATATTACTAAATTATTGTCTt
ggttattttctatttcggtAAAGAATTATCATACAAAAAGTACACTGGAT
TACTCCTCATTATCAtagcaaaaaatacaaattttattttctctctCAAT
ACAGCATTTGTTGTGAAACCACAAATAACATTGTTCACATTCAAAACATT
TATcatcttctttttcagtttccTCTTCACTAAGACAAATATCTGAGCAC
ACAGGacaatgaaaaatctttttgatgcaTAGCAAATATGGACAAATATA
CGATTTAAAGAATAAACTCAAGTTGGGTAGCATATCATACCAATACTCTT
GGTCAAAAGCAACTTTGAGAATGAGAGGTGGTCCTTTTGGTGTCCATACC
ACAAAAAACGAATATTGTGTACCAGTTATTGCCATTTGACCATTCACTTG
GGCATAGTAAGAATGGTTCTTCTTCAGTCTTAGTTCATTGCCATTCAATT
CTAAATAACCTAGTTCTCTATAAGTTTCACCTTCACTGATGGATTTCTCT
CTAAGACTGTATGGACATTTCACTTCCACGCATACACGAACATCGCAATC
CTTACATTTGCATGTAAATATGCCGTCTGGAGTGGCACCAAGATACGGAT
TGCTTTTGTAAACGTGTAAAccagaagaaagaagtttaccATGTTTATGT
TTAATACCCTCAACTTTCATGAATGCCTCTAAAGCAATTTTCTCTTTAGT
TCTGCCCCAAGTTAGTGGTTTTGCACTAACTTTTTTAGGTTCACAAAGGG
ACAGAACCATATTACtcattttcgttgtttttgacCTTGCCatcgatttt
atttttgaattaatttcgtaaaatttggatGCTGTAATCCTTCCTTTACG
CTGTTCCCACCAGCAGTTAGAATTTGATTGGGATCGTGTTGCTTTTTCTA
ATTCATTTAATTGAGAGTCgttgaaagataattttgagttgaattCTTGT
ATGATAAAAAAGTCATGATCATGATGTGAACTCACAATTTTTTCTGCAAT
GACTGGAAGTGGAGGTGGCATGTCAAGGTTAGGTGGAGGAGTGAAACAAT
TGTTGATCACAGCCATTGGGAATTCTTTTCTAATGGTATTGATATAAAAT
TCCTTTCTGTCGTCAGATACCTCTCGATATTTGATGGGTCTTGGATCATA
AAGTACACGGTCATTATTCAATTTATGTTTTGGGGTTTTATTGTCAGTAT
GGTGTTTTACAAAATCAATATTTATAACTTTTTGTGGGGTGAAGTCTGTG
CGTGCTGGTGTGTTCCAACCACAAGGAAGGCTTGTTGACGGTAACGAATT
AATGTATTCATTAGCAAACTCAAGTTTATAAAGAGCTGCAATGACATGAT
TACAGCTTTCACC Coding sequence (CDS) from alignment at sc0003555:2709..4121 >TCONS_00042630 ID=TCONS_00042630|Name=TCONS_00042630|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at sc0003555:2709..4121 (Clytia hemisphaerica)
TTACTCCTCATTATCAtagcaaaaaatacaaattttattttctctctCAA
TACAGCATTTGTTGTGAAACCACAAATAACATTGTTCACATTCAAAACAT
TTATcatcttctttttcagtttccTCTTCACTAAGACAAATATCTGAGCA
CACAGGacaatgaaaaatctttttgatgcaTAGCAAATATGGACAAATAT
ACGATTTAAAGAATAAACTCAAGTTGGGTAGCATATCATACCAATACTCT
TGGTCAAAAGCAACTTTGAGAATGAGAGGTGGTCCTTTTGGTGTCCATAC
CACAAAAAACGAATATTGTGTACCAGTTATTGCCATTTGACCATTCACTT
GGGCATAGTAAGAATGGTTCTTCTTCAGTCTTAGTTCATTGCCATTCAAT
TCTAAATAACCTAGTTCTCTATAAGTTTCACCTTCACTGATGGATTTCTC
TCTAAGACTGTATGGACATTTCACTTCCACGCATACACGAACATCGCAAT
CCTTACATTTGCATGTAAATATGCCGTCTGGAGTGGCACCAAGATACGGA
TTGCTTTTGTAAACGTGTAAAccagaagaaagaagtttaccATGTTTATG
TTTAATACCCTCAACTTTCATGAATGCCTCTAAAGCAATTTTCTCTTTAG
TTCTGCCCCAAGTTAGTGGTTTTGCACTAACTTTTTTAGGTTCACAAAGG
GACAGAACCATATTACtcattttcgttgtttttgacCTTGCCatcgattt
tatttttgaattaatttcgtaaaatttggatGCTGTAATCCTTCCTTTAC
GCTGTTCCCACCAGCAGTTAGAATTTGATTGGGATCGTGTTGCTTTTTCT
AATTCATTTAATTGAGAGTCgttgaaagataattttgagttgaattCTTG
TATGATAAAAAAGTCATGATCATGATGTGAACTCACAATTTTTTCTGCAA
TGACTGGAAGTGGAGGTGGCATGTCAAGGTTAGGTGGAGGAGTGAAACAA
TTGTTGATCACAGCCATTGGGAATTCTTTTCTAATGGTATTGATATAAAA
TTCCTTTCTGTCGTCAGATACCTCTCGATATTTGATGGGTCTTGGATCAT
AAAGTACACGGTCATTATTCAATTTATGTTTTGGGGTTTTATTGTCAGTA
TGGTGTTTTACAAAATCAATATTTATAACTTTTTGTGGGGTGAAGTCTGT
GCGTGCTGGTGTGTTCCAACCACAAGGAAGGCTTGTTGACGGTAACGAAT
TAATGTATTCATTAGCAAACTCAAGTTTATAAAGAGCTGCAATGACATGA
TTACAGCTTTCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042630-exon-sc0003555-1491911889:2709..4121 | TCONS_00042630-exon-sc0003555-1491911889:2709..4121 | Clytia hemisphaerica | exon |
| TCONS_00042630-exon-sc0003555-1510915933:2709..4121 | TCONS_00042630-exon-sc0003555-1510915933:2709..4121 | Clytia hemisphaerica | exon |
| TCONS_00042630-exon-sc0003555-1575043694:2709..4121 | TCONS_00042630-exon-sc0003555-1575043694:2709..4121 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003555 | supercontig | sc0003555:2709..4121 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004518 | nuclease activity |
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0004518 |
nuclease activity |
Blast
The following BLAST results are available for this feature:
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