TCONS_00042628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042628
Unique NameTCONS_00042628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042628 ID=TCONS_00042628|Name=TCONS_00042628|organism=Clytia hemisphaerica|type=transcript|length=291bp
GTCATTCTATTTTCACAGGTATAATATTATTAATACAATGTCAAATGata
gaacaaattaaaaaacatgATTCATACCAAAAAGTTCAACCAAAGAATTT
TCAATATTGCTGGAAAGTTATCCTCCGGAATTCAATTTGGCCGGTTACCA
TATTGTATCTTTCAGACAGTTTATATATCTTTCCATCGTTAGAAAGACAA
CCTGAAGAAGAAAACCTTACATTCTAATGGGCCCACAAATGAAAGATTGG
TCTTTCAAGAATCAACGGCCTTTTTTCGGCGATTGAGTTTC
Run BLAST on NCBI

transcript from alignment at sc0003554:9019..9469-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042628 ID=TCONS_00042628|Name=TCONS_00042628|organism=Clytia hemisphaerica|type=transcript|length=451bp|location=Sequence derived from alignment at sc0003554:9019..9469- (Clytia hemisphaerica)
GTCATTCTATTTTCACAGGTATAATATTATTAATACAATGTCAAATGATA
GAACAAATTAAAAAACATGATTCATACCAAAAAGTTCAACCAAAGAATTT
TCAATATTGCTGGAAAGTTATCCTCCGGAATTCAATTTGGCCGGTTACCA
TATTGTATCTTTCAGACAGTTTATATATCTTTCCATCGTTAGAAAGACAA
CCTGAAGAAGAAAACCTTACATTCTAATGGGCCCACAAATGAAAGATTGG
TCTTTCAAGAGTAAGAAGATTTTGTTTGTACCCCTTTTCGACGCATTTTT
TCCAAATATTGAGTTTTTACAGTACTTGAAAAACTTAAAATTTTAGATAT
ACATATTCAAAGTTATACACCAAACTTAAGTGACTTTTCCTTCCGTTCAA
ATTTCGTATTCTACTTTTAGATCAACGGCCTTTTTTCGGCGATTGAGTTT
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026442XLOC_026442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042628-exon-sc0003554-1575043694:9210..9469TCONS_00042628-exon-sc0003554-1575043694:9210..9469Clytia hemisphaericaexon
TCONS_00042628-exon-sc0003554-1575043694:9019..9049TCONS_00042628-exon-sc0003554-1575043694:9019..9049Clytia hemisphaericaexon
TCONS_00042628-exon-sc0003554-1510915933:9210..9469TCONS_00042628-exon-sc0003554-1510915933:9210..9469Clytia hemisphaericaexon
TCONS_00042628-exon-sc0003554-1510915933:9019..9049TCONS_00042628-exon-sc0003554-1510915933:9019..9049Clytia hemisphaericaexon
TCONS_00042628-exon-sc0003554-1491911889:9210..9469TCONS_00042628-exon-sc0003554-1491911889:9210..9469Clytia hemisphaericaexon
TCONS_00042628-exon-sc0003554-1491911889:9019..9049TCONS_00042628-exon-sc0003554-1491911889:9019..9049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003554supercontigsc0003554:9019..9469 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.01624	1.96493	2.81256	3.38739	1.16267	0.918758	4.98799	5.18855	1.45305	0	1.31022	0.287097	1.14679	2.08417	2.403	2.03573	3.2361	1.91629	0.458247	0.739806	0.416792	0.60989	3.76453	3.41481	1.14514	0.413066	0.591096	3.02817	9.27662	8.97689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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