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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042627 ID=TCONS_00042627|Name=TCONS_00042627|organism=Clytia hemisphaerica|type=transcript|length=1191bp
TTCAGTACAAGAACAAGAACTATAAAAATGGTTTTAGTGGGTGTCATCGG
TGGTACAGGCGGATGTGGAGTGCCACTTATTAATTATCTCCTCGATAAAG
GATACAGTGTACGAATGCTTGCACGGACACCAGAGAAAGTAGAACAAAAA
GACAACCCAGAAGTGAATGTCATCAAAGGCGATGCTTTGAATGAAGAGGA
CATTGCTCAAGTTTGTCAAGATGTTGACATCCTCATCTCATGTGCTGGTG
GAGGTCCTGGTGTGCGTATCATGGAAAAACTGGCATCTAATGTCGTCAAA
GCAAAGCCAAAACGTTGTTATTTCATCACCTCATTAGGAATGGGTGGTAG
CTCCACTGCTGTTAACTTATTGCTTAGTTTGGTGGTTTGTCGAAAGAACA
TCGTTGACTGTGACAAAGCAGATTCTCTTATCTTGGAGAAAGGTTATACA
GTTGTTCGTCCTTGTGAATTGAAAGGCGATCCTTTGGGTGATTATTACGC
TACTTCCAAGACCGGAATGTCTATCAAAGCCATTTCCAAAACTGATGTCG
CCTTGTTTCTTGCAAACTGTGTGGAAAATACAGAGTGGGATGGAAAACCT
GTGCAGTTGTACAATGCAGCCTGTAAAAAGTAATTGGATTGTTTGTATAA
TTCATTAAAGTCGGCCTAAAATGGTAAAAAGTGACCAGAATCAGTAAAAA
TGACCAAACTTCACAATATTGCAACTtttgaaaatctattgttcCCAGAT
CAAAAAAAATCAGTGGATGGTTTTGGGGTGGAATTTATCTTTATATTTCG
TAATTTTTGAGACCCAGTCTCAGCAGAGAGTCAGTTGCTGTTTCATAGAG
TtgtgagagactttcgagggctGAAAAAGGGGACCAATATATGGTTCTTA
TTCCCAAATGCCGACCCTAGATTTCACGCATGCACATTTCCCCTAGAATc
tgcgagattatgtatctggaattctttATGGTTACGGCTAAagtggcgag
taaggcaagtaatggcgggtgaaagcaagtttgATATTTGACgtattatg
tcgactttgcttatacggtgtttttcccgtacagaacAAAGTAGACAACG
ATATGTCGCCTTTGGCGACGACCCGTAcgggcagccccgcaaccgtagcc
gtagaatatctccgatacataatctcgctaatcTTTTcgag Run BLAST on NCBI protein sequence of TCONS_00042627-protein >TCONS_00042627-protein ID=TCONS_00042627-protein|Name=TCONS_00042627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
FSTRTRTIKMVLVGVIGGTGGCGVPLINYLLDKGYSVRMLARTPEKVEQK
DNPEVNVIKGDALNEEDIAQVCQDVDILISCAGGGPGVRIMEKLASNVVK
AKPKRCYFITSLGMGGSSTAVNLLLSLVVCRKNIVDCDKADSLILEKGYT
VVRPCELKGDPLGDYYATSKTGMSIKAISKTDVALFLANCVENTEWDGKP
VQLYNAACKK Run BLAST on NCBI transcript from alignment at sc0003552:4284..5474 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042627 ID=TCONS_00042627|Name=TCONS_00042627|organism=Clytia hemisphaerica|type=transcript|length=1191bp|location=Sequence derived from alignment at sc0003552:4284..5474 (Clytia hemisphaerica)
ctcgAAAAgattagcgagattatgtatcggagatattctacggctacggt
tgcggggctgcccgTACGGGTCGTCGCCAAAGGCGACATATCGTTGTCTA
CTTTgttctgtacgggaaaaacaccgtataagcaaagtcgacataatacG
TCAAATATcaaacttgctttcacccgccattacttgccttactcgccact
TTAGCCGTAACCATaaagaattccagatacataatctcgcagATTCTAGG
GGAAATGTGCATGCGTGAAATCTAGGGTCGGCATTTGGGAATAAGAACCA
TATATTGGTCCCCTTTTTCagccctcgaaagtctctcacaACTCTATGAA
ACAGCAACTGACTCTCTGCTGAGACTGGGTCTCAAAAATTACGAAATATA
AAGATAAATTCCACCCCAAAACCATCCACTGATTTTTTTTGATCTGGgaa
caatagattttcaaaAGTTGCAATATTGTGAAGTTTGGTCATTTTTACTG
ATTCTGGTCACTTTTTACCATTTTAGGCCGACTTTAATGAATTATACAAA
CAATCCAATTACTTTTTACAGGCTGCATTGTACAACTGCACAGGTTTTCC
ATCCCACTCTGTATTTTCCACACAGTTTGCAAGAAACAAGGCGACATCAG
TTTTGGAAATGGCTTTGATAGACATTCCGGTCTTGGAAGTAGCGTAATAA
TCACCCAAAGGATCGCCTTTCAATTCACAAGGACGAACAACTGTATAACC
TTTCTCCAAGATAAGAGAATCTGCTTTGTCACAGTCAACGATGTTCTTTC
GACAAACCACCAAACTAAGCAATAAGTTAACAGCAGTGGAGCTACCACCC
ATTCCTAATGAGGTGATGAAATAACAACGTTTTGGCTTTGCTTTGACGAC
ATTAGATGCCAGTTTTTCCATGATACGCACACCAGGACCTCCACCAGCAC
ATGAGATGAGGATGTCAACATCTTGACAAACTTGAGCAATGTCCTCTTCA
TTCAAAGCATCGCCTTTGATGACATTCACTTCTGGGTTGTCTTTTTGTTC
TACTTTCTCTGGTGTCCGTGCAAGCATTCGTACACTGTATCCTTTATCGA
GGAGATAATTAATAAGTGGCACTCCACATCCGCCTGTACCACCGATGACA
CCCACTAAAACCATTTTTATAGTTCTTGTTCTTGTACTGAA Coding sequence (CDS) from alignment at sc0003552:4284..5474 >TCONS_00042627 ID=TCONS_00042627|Name=TCONS_00042627|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at sc0003552:4284..5474 (Clytia hemisphaerica)
TTACTTTTTACAGGCTGCATTGTACAACTGCACAGGTTTTCCATCCCACT
CTGTATTTTCCACACAGTTTGCAAGAAACAAGGCGACATCAGTTTTGGAA
ATGGCTTTGATAGACATTCCGGTCTTGGAAGTAGCGTAATAATCACCCAA
AGGATCGCCTTTCAATTCACAAGGACGAACAACTGTATAACCTTTCTCCA
AGATAAGAGAATCTGCTTTGTCACAGTCAACGATGTTCTTTCGACAAACC
ACCAAACTAAGCAATAAGTTAACAGCAGTGGAGCTACCACCCATTCCTAA
TGAGGTGATGAAATAACAACGTTTTGGCTTTGCTTTGACGACATTAGATG
CCAGTTTTTCCATGATACGCACACCAGGACCTCCACCAGCACATGAGATG
AGGATGTCAACATCTTGACAAACTTGAGCAATGTCCTCTTCATTCAAAGC
ATCGCCTTTGATGACATTCACTTCTGGGTTGTCTTTTTGTTCTACTTTCT
CTGGTGTCCGTGCAAGCATTCGTACACTGTATCCTTTATCGAGGAGATAA
TTAATAAGTGGCACTCCACATCCGCCTGTACCACCGATGACACCCACTAA
AACCATTTTTATAGTTCTTGTTCTTGTACTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042627-exon-sc0003552-1491911889:4284..5474 | TCONS_00042627-exon-sc0003552-1491911889:4284..5474 | Clytia hemisphaerica | exon |
| TCONS_00042627-exon-sc0003552-1510915933:4284..5474 | TCONS_00042627-exon-sc0003552-1510915933:4284..5474 | Clytia hemisphaerica | exon |
| TCONS_00042627-exon-sc0003552-1575043694:4284..5474 | TCONS_00042627-exon-sc0003552-1575043694:4284..5474 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003552 | supercontig | sc0003552:4284..5474 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016040 | NAD(P)-bd_dom |
Blast
The following BLAST results are available for this feature:
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