TCONS_00042622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042622
Unique NameTCONS_00042622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042622 ID=TCONS_00042622|Name=TCONS_00042622|organism=Clytia hemisphaerica|type=transcript|length=1368bp
aaaatttttgacattaaagTAGATTCAAAAATAACTGTTTTACAATGAAT
GTAGCTATAAAAATAACTGTTTTACAAGGATACAAGGAATGTAGCTATAA
AAATAATTGTTTTACAAGGAATGTAGCTATAAAAATAACTTTATCTGGTG
CAGGCGATTGCAACAGCAATTCTTTTTGCAAACGAGTCTTTTCGAGCCAG
ATTCCATTGGTAAATGAAAAATTGGACATAAAAGGTGAAATGCTCCTGTG
TCATCAGTTTCCCTGATGTCTTGATGCACTGCAGAAAACTGTTAAACTGC
TCGCAAATGGATGTGTTCAAGCCGTTGAATCCAAGCAATCTGTTTGACTT
GAACACATCAGAACATTTATGTCCATATCCATGGAAGATATCGTGGAAAA
AGCGGGTGTCTTGGAAGAAACCACTTTCCCTGTTCCTACCATACTCCTCC
AATGAACAAGcaaagtcataaaaaatttcatatgGTGCCTTTTTCAAGAA
AGCGTATAGAGGCGCTGCAGCATCCTTTCGGCCTTCTGCGTGGGGAATTA
TATGATATCCGTAACAGTGCCCGTGTGCTGGGCAAAACCACAAAAACAAA
TAGGATCTGCCTTTGGCAgttggaaaaatctttgaacaaaCGTCTTTGTC
AGGAAGATCGTCAAAGTTGTCCAACCTTTTGTTGTCTTTGTCGGCGCTAA
ACTTTCTCGTTTCCCGAATCTGGTCCCCATCATGAAAATAGTACGCTCTC
CCGTCTCTTGGAGGATTATATTTCTTGACTAATCTTGGATCTTCAGGGGG
AACCTCATCATCCATTATCTCTTTTCTTAGAAGAAAAAGATATCTAAGAA
ATTCAACTCCGTATGTTTTAGGTGCAGATCCTTTGGAGAGAGATGTTACG
ATGAACAGCCAATCACCGAGCTCAGGAAAGAAGAACTTTGAAGACCGATG
GAATTCTTCTACAACTCGCCACAGATCACTGTTCTCTTCGATTGCATTCA
CCGACGCCAATAAAGTGTTCAAAGTTTCAAATTGAGGAAAAGAATCTCCG
ACAGGCTGCTCAATTGGCGTCACATTAATCTGTTTAAATGTAATTCCGAT
CTTTGTGGCATCGGCGGCCAGGTACTTTGGATCTGATCCACAACTCGGAC
ATTTTTGAACAAAGTCCAGATCCATTGCTGAAGCCACTTGATCAGAGTGT
TCCTGGACATAAATTCACATGGAGACTGGTAGTCTGTGTACCTATTTTTG
ACAACCTTGACAAACCctgaaaatgtttgtttgtttgctGGTCATTACGC
TGTCCACGAACTCCCAGCCTATTTCGTACCCGCAGGCAACTGTTGTGCTA
GATCGAAACAAACTGTCT
Run BLAST on NCBI

transcript from alignment at sc0003545:5149..8459+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042622 ID=TCONS_00042622|Name=TCONS_00042622|organism=Clytia hemisphaerica|type=transcript|length=3311bp|location=Sequence derived from alignment at sc0003545:5149..8459+ (Clytia hemisphaerica)
aaaatttttgacattaaagTAGATTCAAAAATAACTGTTTTACAATGAAT
GTAGCTATAAAAATAACTGTTTTACAAGGATACAAGGAATGTAGCTATAA
AAATAATTGTTTTACAAGGAATGTAGCTATAAAAATAACTTTATCTGGTG
CAGGCGATTGCAACAGCAATTCTTTTTGCAAACGAGTCTTTTCGAGCCAG
ATTCCATTGGTAAATGAAAAATTGGACATAAAAGGTGAAATGCTCCTGTG
TCATCAGTTTCCCTGATGTCTTGATGCACTGCAGAAAACTGTTAAACTGC
TCGCAAATGGATGTGTTCAAGCCGTTGAATCCAAGCAATCTGTTTGACTT
GAACACATCAGAACATTTATGTCCATATCCATGGAAGATATCGTGGAAAA
AGCGGGTGTCTTGGAAGAAACCACTTTCCCTGTTCCTACCATACTCCTCC
AATGAACAAGcaaagtcataaaaaatttcatatgGTGCCTTTTTCAAGAA
AGCGTATAGAGGCGCTGCAGCATCCTTTCGGCCTTCTGCGTGGGGAATTA
TATGATATCCGTAACAGTGCCCGTGTGCTGGGCAAAACCACAAAAACAAA
TAGGATCTGCCTTTGGCAgttggaaaaatctttgaacaaaCGTCTTTGTC
AGGAAGATCGTCAAAGTTGTCCAACCTTTTGTTGTCTTTGTCGGCGCTAA
ACTTTCTCGTTTCCCGAATCTGGTCCCCATCATGAAAATAGTACGCTCTC
CCGTCTCTTGGAGGATTATATTTCTTGACTAATCTTGGATCTTCAGGGGG
AACCTCATCATCCATTATCTCTTTTCTTAGAAGAAAAAGATATCTAAGAA
ATTCAACTCCGTATGTTTTAGGTGCAGATCCTTTGGAGAGAGATGTTACG
ATGAACAGCCAATCACCGAGCTCAGGAAAGAAGAACTTTGAAGACCGATG
GAATTCTTCTACAACTCGCCACAGATCACTGTTCTCTTCGATTGCATTCA
CCGACGCCAATAAAGTGTTCAAAGTTTCAAATTGAGGTAGGTATCTTTTT
GGAATTAGATTAATTAAACTTGTATCTTTGGTTAATATCACTATTAATTT
ACTCAATGATGTTCTTTCGAGAGTTGAGATATCACACTCAAAGAGTTTTT
CTGTCACTAAACGCACCACAGGGATTTCTGATCTCATCAGTGTTTTTTTC
GCTACTTCTAAATCTTCTTTACTGGCCTTGACTTTGCCACAAAAATGTct
tgaaattaaatttagagCCTCGTTGACGACTATTCTTGATTTACTGTTGC
GGTTGTTAATGAAGGTTCGGTCATATCTCCTTCTTTTTGTAGGAAAAGAA
TCTCCGACAGGCTGCTCAATTGGCGTCACATTAATCTGCTTAAATGTAAT
TCCGATCTTTGTGGCATCGGCGGCCAGGTACTTTGGATCTGATCCACAAC
TCGGACATTTTTGAACAAAGTCCAGATCCATTGCTGAAGCCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGGGGAACGTCATCATCC
ATTATCTCTTTTCTTAGAAGAAAAAGATATCTCAGAAATTCAACTCCGTA
TGTTTTAGGTGCAGATCCTTTGGAGAGCGATGTTACGATGAACAGCCAAT
CACCGAGCTCAGGAAAGAAGAACTTTGAAGACCGATGGAATTCTTCTACA
ACTCGCCACAGATCACTGTTCTCTTCGATTGCATTCACCGACGCCAATAA
AGTGTTCAAAGTTTCAAATTGAGGTAGGTATCTTTTTGGAATTAGATTAA
TTAAACTTGTATCTTTGGTTAATATCACTATTAATTTACTCAATGATGTT
CTTTCGAGAGTTGAGATATCACACTCAAAGAGTTTTTCTGTCACTAAACG
CACCACAGGGATTTCTGATTTCATCAGTGTTTTTTTCGCTACTTCTAAAT
CTTCTTTACTGGCCTTGACTTTGCCACAAAAATGTcttgaaattaaattt
agagCCTCGTTGACGACTATTCTTGATTTACTGTTGCGGTTGTTAATGAA
GGTTCGGTCATATCTCCTTCTTTTTGTAGGAAAAGAATCTCCGACAGGCT
GCTCAATTGGCGTCACATTAATCTGTTTAAATGTAATTCCGATCTTTGTG
GCATCGGCGGCCAGGTACTTTGGATCTGATCCACAACTCGGACATTTTTG
AACAAAGTCCAGATCCATTGCTGAAGCCACTTGATCAGAGTGTTCCTGGA
CATAAATTCACATGGAGACTGGTAGTCTGTGTACCTATTTTTGACAACCT
TGACAAACCctgaaaatgtttgtttgtttgctGGTCATTACGCTGTCCAC
GAACTCCCAGCCTATTTCGTACCCGCAGGCAACTGTTGTGCTAGATCGAA
ACAAACTGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026438XLOC_026438Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042622-exon-sc0003545-1491911889:5149..6184TCONS_00042622-exon-sc0003545-1491911889:5149..6184Clytia hemisphaericaexon
TCONS_00042622-exon-sc0003545-1510915933:5149..6184TCONS_00042622-exon-sc0003545-1510915933:5149..6184Clytia hemisphaericaexon
TCONS_00042622-exon-sc0003545-1575043694:5149..6184TCONS_00042622-exon-sc0003545-1575043694:5149..6184Clytia hemisphaericaexon
TCONS_00042622-exon-sc0003545-1491911889:8128..8459TCONS_00042622-exon-sc0003545-1491911889:8128..8459Clytia hemisphaericaexon
TCONS_00042622-exon-sc0003545-1510915933:8128..8459TCONS_00042622-exon-sc0003545-1510915933:8128..8459Clytia hemisphaericaexon
TCONS_00042622-exon-sc0003545-1575043694:8128..8459TCONS_00042622-exon-sc0003545-1575043694:8128..8459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003545supercontigsc0003545:5149..8459 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.343747	0.123534	0.616379	0.0706099	0	0	0	0.0387495	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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