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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042621 ID=TCONS_00042621|Name=TCONS_00042621|organism=Clytia hemisphaerica|type=transcript|length=770bp
AGTGCGAAGAATGGAACAAGGATgctaaaagtaacaaaaacGCTCTTGAA
ACCACTTGTaaagttttaaataaaaagttacaaattaTCATTGAGATTAC
AGATAACATCGTGAATGAATTAGACGATGAAGAGCAAATGGGAATACAAT
ATGAGAAGTGTTCCAAAGTTGAGCGTCGAGTTGAGTCGTTGATTTTAGCT
GTCAAAAGTGAATTGTCAAAAGAGAACCCAAAAATTGCTGTTAGTGATAG
TAGTGTCACAAGTACCCGAGAGAAACAGCGGAAAGCTGATATTCGTCTAC
CCAAATTGAGTTTGAAACCCTACGATGGAGATCCGTTGAaatggaaaaca
tttttcaatatatttgatTGTGCCGTTCATCAGAGAGATGATATGACCAA
CGTCGAAAAAATGACATACCTCACCAGTTTACTTGAAGGAGAAGCGGAAT
CTTGCATCCAAGGTATAACATTATCTAACGAAAATTACGATATTGCGctc
aaaatgttaaaagaaaGGTTCGGTGACGAACAGATAATTATTAGTGCGCA
CATGAATAAATTGTTAAACTTAGAAACAACATCAAACTTTATCGATATCA
AAGAACTGAGAATGCTTTACAACAACATCGAAATTCAAATTAGAAATGTT
CGTGGAATCGGTCTGGAGGAGAAACGTTGCGGCCCTATGCTCGCACCAGT
TATTATGTCGAAATTGCCACAAGAAATAAAATTGTTGTTGACTAGAAAGT
TCGGAAAGGATGTATGGGCA Run BLAST on NCBI protein sequence of TCONS_00042621-protein >TCONS_00042621-protein ID=TCONS_00042621-protein|Name=TCONS_00042621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
CEEWNKDAKSNKNALETTCKVLNKKLQIIIEITDNIVNELDDEEQMGIQY
EKCSKVERRVESLILAVKSELSKENPKIAVSDSSVTSTREKQRKADIRLP
KLSLKPYDGDPLKWKTFFNIFDCAVHQRDDMTNVEKMTYLTSLLEGEAES
CIQGITLSNENYDIALKMLKERFGDEQIIISAHMNKLLNLETTSNFIDIK
ELRMLYNNIEIQIRNVRGIGLEEKRCGPMLAPVIMSKLPQEIKLLLTRKF
GKDVWA Run BLAST on NCBI transcript from alignment at sc0003544:1..770 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042621 ID=TCONS_00042621|Name=TCONS_00042621|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at sc0003544:1..770 (Clytia hemisphaerica)
TGCCCATACATCCTTTCCGAACTTTCTAGTCAACAACAATTTTATTTCTT
GTGGCAATTTCGACATAATAACTGGTGCGAGCATAGGGCCGCAACGTTTC
TCCTCCAGACCGATTCCACGAACATTTCTAATTTGAATTTCGATGTTGTT
GTAAAGCATTCTCAGTTCTTTGATATCGATAAAGTTTGATGTTGTTTCTA
AGTTTAACAATTTATTCATGTGCGCACTAATAATTATCTGTTCGTCACCG
AACCtttcttttaacattttgagCGCAATATCGTAATTTTCGTTAGATAA
TGTTATACCTTGGATGCAAGATTCCGCTTCTCCTTCAAGTAAACTGGTGA
GGTATGTCATTTTTTCGACGTTGGTCATATCATCTCTCTGATGAACGGCA
CAatcaaatatattgaaaaatgttttccattTCAACGGATCTCCATCGTA
GGGTTTCAAACTCAATTTGGGTAGACGAATATCAGCTTTCCGCTGTTTCT
CTCGGGTACTTGTGACACTACTATCACTAACAGCAATTTTTGGGTTCTCT
TTTGACAATTCACTTTTGACAGCTAAAATCAACGACTCAACTCGACGCTC
AACTTTGGAACACTTCTCATATTGTATTCCCATTTGCTCTTCATCGTCTA
ATTCATTCACGATGTTATCTGTAATCTCAATGAtaatttgtaacttttta
tttaaaactttACAAGTGGTTTCAAGAGCgtttttgttacttttagcATC
CTTGTTCCATTCTTCGCACT Coding sequence (CDS) from alignment at sc0003544:1..770 >TCONS_00042621 ID=TCONS_00042621|Name=TCONS_00042621|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0003544:1..770 (Clytia hemisphaerica)
TGCCCATACATCCTTTCCGAACTTTCTAGTCAACAACAATTTTATTTCTT
GTGGCAATTTCGACATAATAACTGGTGCGAGCATAGGGCCGCAACGTTTC
TCCTCCAGACCGATTCCACGAACATTTCTAATTTGAATTTCGATGTTGTT
GTAAAGCATTCTCAGTTCTTTGATATCGATAAAGTTTGATGTTGTTTCTA
AGTTTAACAATTTATTCATGTGCGCACTAATAATTATCTGTTCGTCACCG
AACCtttcttttaacattttgagCGCAATATCGTAATTTTCGTTAGATAA
TGTTATACCTTGGATGCAAGATTCCGCTTCTCCTTCAAGTAAACTGGTGA
GGTATGTCATTTTTTCGACGTTGGTCATATCATCTCTCTGATGAACGGCA
CAatcaaatatattgaaaaatgttttccattTCAACGGATCTCCATCGTA
GGGTTTCAAACTCAATTTGGGTAGACGAATATCAGCTTTCCGCTGTTTCT
CTCGGGTACTTGTGACACTACTATCACTAACAGCAATTTTTGGGTTCTCT
TTTGACAATTCACTTTTGACAGCTAAAATCAACGACTCAACTCGACGCTC
AACTTTGGAACACTTCTCATATTGTATTCCCATTTGCTCTTCATCGTCTA
ATTCATTCACGATGTTATCTGTAATCTCAATGAtaatttgtaacttttta
tttaaaactttACAAGTGGTTTCAAGAGCgtttttgttacttttagcATC
CTTGTTCCATTCTTCGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042621-exon-sc0003544-1491911889:1..770 | TCONS_00042621-exon-sc0003544-1491911889:1..770 | Clytia hemisphaerica | exon |
| TCONS_00042621-exon-sc0003544-1510915933:1..770 | TCONS_00042621-exon-sc0003544-1510915933:1..770 | Clytia hemisphaerica | exon |
| TCONS_00042621-exon-sc0003544-1575043694:1..770 | TCONS_00042621-exon-sc0003544-1575043694:1..770 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003544 | supercontig | sc0003544:1..770 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005312 | DUF1759 |
Blast
The following BLAST results are available for this feature:
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