TCONS_00042619 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042619
Unique NameTCONS_00042619
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042619 ID=TCONS_00042619|Name=TCONS_00042619|organism=Clytia hemisphaerica|type=transcript|length=269bp
ATGGAagggaataaaaatgaaaggggacagtaaacaatttaattttctgt
aattttcttgaaacttaTATACCTCTAATTTTGATGGGAATTTCTGAAGG
TTTTGTTGGGTGAAGTAgactaaaatctaaaagattCCATTACTCGAAAT
ACATTTTGTATTCCACAATCTATGTTTGTTAAATTTAAATTCATTGTCAT
TtcgctaaaaactaaaaactaaggTAGAACTTGTAGTTTCTTTaggtttt
tcacacatttttttaGAAC
Run BLAST on NCBI

transcript from alignment at sc0003542:7247..7515

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042619 ID=TCONS_00042619|Name=TCONS_00042619|organism=Clytia hemisphaerica|type=transcript|length=269bp|location=Sequence derived from alignment at sc0003542:7247..7515 (Clytia hemisphaerica)
GTTCtaaaaaaatgtgtgaaaaacctAAAGAAACTACAAGTTCTAcctta
gtttttagtttttagcgaAATGACAATGAATTTAAATTTAACAAACATAG
ATTGTGGAATACAAAATGTATTTCGAGTAATGGaatcttttagattttag
tcTACTTCACCCAACAAAACCTTCAGAAATTCCCATCAAAATTAGAGGTA
TAtaagtttcaagaaaattacagaaaattaaattgtttactgtccccttt
catttttattccctTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026435XLOC_026435Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042619-exon-sc0003542-1491911889:7247..7515TCONS_00042619-exon-sc0003542-1491911889:7247..7515Clytia hemisphaericaexon
TCONS_00042619-exon-sc0003542-1510915933:7247..7515TCONS_00042619-exon-sc0003542-1510915933:7247..7515Clytia hemisphaericaexon
TCONS_00042619-exon-sc0003542-1575043694:7247..7515TCONS_00042619-exon-sc0003542-1575043694:7247..7515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003542supercontigsc0003542:7247..7515 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.88471	1.12117	0.99883	1.59589	3.20786	0	1.06206	2.89262	2.42215	0.600044	0	6.40705	3.88773	2.12466	3.71419	2.49766	4.26244	3.42705	8.3512	6.51012	35.8987	29.4269	9.2997	9.62488	0.617209	1.10169	9.16807	21.6674	1.27611	3.65252
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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