TCONS_00042615 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042615
Unique NameTCONS_00042615
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042615 ID=TCONS_00042615|Name=TCONS_00042615|organism=Clytia hemisphaerica|type=transcript|length=542bp
CTGGTAACTCTTTTTCTATTCTTATTTGTATAAGATTTATAGGCTTTTAA
GATAATGATAGAAATTCTAAAAGAGAAAAGTTATGTTAATTCTTTCGGAA
ATCTTCATAATCTCGTTTGATCCTGCCAGGAAACAGCTCTTTGTGTTTAG
TTGCCTCCTTCGATGGTTTTCTTAAAAAGAATGAATTGACAGCTCCCGAT
TTCTCCGCGCATCGATGCATTGAGATTGTCTGTACGCTCAAACATTTTAT
GTGATTCCTTTGGCCACCACTCCAATTCCTTTTTAACGATTCCATAAAAG
TGTCCATATGCCAGTCCAACTCTTAAGTGTTCTTCTGACAGTGTGATTAC
CCTTCGGTATATACTTCTGGTTGATTCTTTTTCCAAATTGATAATTTATT
TCGGATAAAACCTGCACAACTTTGCGTTGGTATTGTGCCCGGGTTCTGCA
AAAAGGTTGAACATGTCATAAGTGTAGTACGTAATATGCAGATTCCAATC
TTCCGTTCTTTCAGCTGTAATGAAATCTTTGACAATGCTGAC
Run BLAST on NCBI

transcript from alignment at sc0003540:92..633

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042615 ID=TCONS_00042615|Name=TCONS_00042615|organism=Clytia hemisphaerica|type=transcript|length=542bp|location=Sequence derived from alignment at sc0003540:92..633 (Clytia hemisphaerica)
GTCAGCATTGTCAAAGATTTCATTACAGCTGAAAGAACGGAAGATTGGAA
TCTGCATATTACGTACTACACTTATGACATGTTCAACCTTTTTGCAGAAC
CCGGGCACAATACCAACGCAAAGTTGTGCAGGTTTTATCCGAAATAAATT
ATCAATTTGGAAAAAGAATCAACCAGAAGTATATACCGAAGGGTAATCAC
ACTGTCAGAAGAACACTTAAGAGTTGGACTGGCATATGGACACTTTTATG
GAATCGTTAAAAAGGAATTGGAGTGGTGGCCAAAGGAATCACATAAAATG
TTTGAGCGTACAGACAATCTCAATGCATCGATGCGCGGAGAAATCGGGAG
CTGTCAATTCATTCTTTTTAAGAAAACCATCGAAGGAGGCAACTAAACAC
AAAGAGCTGTTTCCTGGCAGGATCAAACGAGATTATGAAGATTTCCGAAA
GAATTAACATAACTTTTCTCTTTTAGAATTTCTATCATTATCTTAAAAGC
CTATAAATCTTATACAAATAAGAATAGAAAAAGAGTTACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026431XLOC_026431Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042615-exon-sc0003540-1491911889:92..633TCONS_00042615-exon-sc0003540-1491911889:92..633Clytia hemisphaericaexon
TCONS_00042615-exon-sc0003540-1510915933:92..633TCONS_00042615-exon-sc0003540-1510915933:92..633Clytia hemisphaericaexon
TCONS_00042615-exon-sc0003540-1575043694:92..633TCONS_00042615-exon-sc0003540-1575043694:92..633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003540supercontigsc0003540:92..633 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.21308	0.103893	0	0	0.574699	0.227068	0.410921	0.641166	0.089779	0.444823	0.539695	0.212865	0.354281	0.0735849	0.18149	0.129845	0	0.0819759	0.113254	0	0	0	0.122156	0	1.83019	1.53132	0.292174	0	0	0.120479
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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