TCONS_00042613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042613
Unique NameTCONS_00042613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042613 ID=TCONS_00042613|Name=TCONS_00042613|organism=Clytia hemisphaerica|type=transcript|length=355bp
CAGATAAATCAAGTCCACACAATGAATAAAGATTTTCGTCAGCTTTGTGA
CTATTCTTCTgcattgatgacttttaaaGCTATTAACAATCTTGCTCCCG
AATATATTTGTGAGCGTGTAAATCTCGCTAGAAACATTCACGACCACTAC
ACTAGATTAgccgctcaaaataatttagcaGTACGGCAAAAAAGAAACAG
ATTTGAAGCAAAAACCTTCGCAAGCTCTACAATTCCTATCTGGAATAACC
TACCCAGGGAATGCTGNAAAGTGTGTCTTGACAAAATGTGTgtagtctgt
aaactttatagaaaagcgcgggaaaatgaagtgaagagaaaaaaagagag
aaaat
Run BLAST on NCBI

protein sequence of TCONS_00042613-protein

>TCONS_00042613-protein ID=TCONS_00042613-protein|Name=TCONS_00042613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
QINQVHTMNKDFRQLCDYSSALMTFKAINNLAPEYICERVNLARNIHDHY
TRLAAQNNLAVRQKRNRFEAKTFASSTIPIWNNLPRECXKVCLDKMCVVC
KLYRKARENEVKRKKERK
Run BLAST on NCBI

transcript from alignment at sc0003539:5784..6138

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042613 ID=TCONS_00042613|Name=TCONS_00042613|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0003539:5784..6138 (Clytia hemisphaerica)
attttctctctttttttctcttcacttcattttcccgcgcttttctataa
agtttacagactacACACATTTTGTCAAGACACACTTTNCAGCATTCCCT
GGGTAGGTTATTCCAGATAGGAATTGTAGAGCTTGCGAAGGTTTTTGCTT
CAAATCTGTTTCTTTTTTGCCGTACtgctaaattattttgagcggcTAAT
CTAGTGTAGTGGTCGTGAATGTTTCTAGCGAGATTTACACGCTCACAAAT
ATATTCGGGAGCAAGATTGTTAATAGCtttaaaagtcatcaatgcAGAAG
AATAGTCACAAAGCTGACGAAAATCTTTATTCATTGTGTGGACTTGATTT
ATCTG

Coding sequence (CDS) from alignment at sc0003539:5784..6138

>TCONS_00042613 ID=TCONS_00042613|Name=TCONS_00042613|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0003539:5784..6138 (Clytia hemisphaerica)
ttttctctctttttttctcttcacttcattttcccgcgcttttctataaa
gtttacagactacACACATTTTGTCAAGACACACTTTNCAGCATTCCCTG
GGTAGGTTATTCCAGATAGGAATTGTAGAGCTTGCGAAGGTTTTTGCTTC
AAATCTGTTTCTTTTTTGCCGTACtgctaaattattttgagcggcTAATC
TAGTGTAGTGGTCGTGAATGTTTCTAGCGAGATTTACACGCTCACAAATA
TATTCGGGAGCAAGATTGTTAATAGCtttaaaagtcatcaatgcAGAAGA
ATAGTCACAAAGCTGACGAAAATCTTTATTCATTGTGTGGACTTGATTTA
TCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026429XLOC_026429Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042613-exon-sc0003539-1491911889:5784..6138TCONS_00042613-exon-sc0003539-1491911889:5784..6138Clytia hemisphaericaexon
TCONS_00042613-exon-sc0003539-1510915933:5784..6138TCONS_00042613-exon-sc0003539-1510915933:5784..6138Clytia hemisphaericaexon
TCONS_00042613-exon-sc0003539-1575043694:5784..6138TCONS_00042613-exon-sc0003539-1575043694:5784..6138Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042613-proteinTCONS_00042613-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003539supercontigsc0003539:5784..6138 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.971992	0.947846	1.37567	3.49929	0.98309	1.29475	0.937237	0.584953	0.819079	1.01456	1.23095	1.61835	1.77771	2.01401	0.413947	0.592305	2.18901	0.934862	1.03325	0.540611	0.704833	0	0	0.506606	2.08717	2.79412	0.333199	0.711197	1.88796	1.64874
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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