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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042612 ID=TCONS_00042612|Name=TCONS_00042612|organism=Clytia hemisphaerica|type=transcript|length=1216bp
cccgaaaaaaatttccaataaaatcggattttacgagaaaatttccccga
tttcccgattttccgattttgaaaaatcggattatcggggaaaatttttc
cgacttgaAGCTCTCCCGTATTTTTGTGaggcgaagttgacagctatgca
gagattgaagatttttgacgtGCACAAAATCACACTTGACAGAACTGgga
aaaagtcaatatttcagTCTCAACTGACACTGATTCCTGCTAACATAAAA
GAAACTACAAAATGCAGTGAATGTAAACCTTACCTTTAGATGCTACTTCA
AGCTTCAGGTATCAGGCATcaagttgaataaaatttccaaaaaatcaaag
ctagaatttgtttgtgggccttgaggaaaacaatcccttctaactaatat
tgtcaaaaaagctaaagaaaCAGCAAATGCATTTATGTAAGGTCTTCAGC
CTCCAAATTATCCTTCAAGAGCATTCTTCTTCACCAGACCCAGAACCATC
ATGCTCaaagaaaacaaccattttTTGTTCACTCCCTACTCGCATCCTTC
CCTTCGATATTGTTTTCTCTACCAAGTTCGTCTATAAATCTGCAGGGATT
TTCCGCAAAAATCACCGACCCTTCTCCAAGGTCGGTAAGGGCAAAGATGA
AATCAAGAAAAGCGCCAAATTGATATCGtccgtaaacacagactctatcc
gccgcgaaacatattacgttttataatatacaaactatgttatatcataa
taacatattatacggacgatagcatcgtctagtatCAATAGAATGTTTCT
ATTAATAAACAAAAGACTGACGATGACGTCAATGacttttatttgattat
aataaaaagaaacttgtcTTTTTTGGGAAGTTGTTTCATTTAAACAGCAA
TGATGagtaaaataaaggaaaaaaaaaacctaAGCGATATNTTTGGGAAG
TTGTTTCATTTAAACAGCAATAATGagtaaaataaaggaaaaaaaaacct
AAGCGATATGAAGCGAGCAGATAGCAATAGTCAAATGATTATTGATTGAC
CACcgatttttcgtgatttttacaattttcacaaGCCCTTTCTACCAAAA
TAAAACCATACTATGCTTCTTTGCTAGGCCTAAAATATACAATCTCGGCG
TAAAacttaagttttcaattttatcaATCCTGATTCACTCGTCAATTTCA
AGATTTCCATCCTCAG Run BLAST on NCBI protein sequence of TCONS_00042612-protein >TCONS_00042612-protein ID=TCONS_00042612-protein|Name=TCONS_00042612-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MHLCKVFSLQIILQEHSSSPDPEPSCSKKTTIFCSLPTRILPFDIVFSTK
FVYKSAGIFRKNHRPFSKVGKGKDEIKKSAKLISSVNTDSIRRETYYVL Run BLAST on NCBI transcript from alignment at sc0003538:5804..7019 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042612 ID=TCONS_00042612|Name=TCONS_00042612|organism=Clytia hemisphaerica|type=transcript|length=1216bp|location=Sequence derived from alignment at sc0003538:5804..7019 (Clytia hemisphaerica)
CTGAGGATGGAAATCTTGAAATTGACGAGTGAATCAGGATtgataaaatt
gaaaacttaagtTTTACGCCGAGATTGTATATTTTAGGCCTAGCAAAGAA
GCATAGTATGGTTTTATTTTGGTAGAAAGGGCttgtgaaaattgtaaaaa
tcacgaaaaatcgGTGGTCAATCAATAATCATTTGACTATTGCTATCTGC
TCGCTTCATATCGCTTaggtttttttttcctttattttactCATTATTGC
TGTTTAAATGAAACAACTTCCCAAANATATCGCTtaggttttttttttcc
tttattttactCATCATTGCTGTTTAAATGAAACAACTTCCCAAAAAAga
caagtttctttttattataatcaaataaaagtCATTGACGTCATCGTCAG
TCTTTTGTTTATTAATAGAAACATTCTATTGatactagacgatgctatcg
tccgtataatatgttattatgatataacatagtttgtatattataaaacg
taatatgtttcgcggcggatagagtctgtgtttacggaCGATATCAATTT
GGCGCTTTTCTTGATTTCATCTTTGCCCTTACCGACCTTGGAGAAGGGTC
GGTGATTTTTGCGGAAAATCCCTGCAGATTTATAGACGAACTTGGTAGAG
AAAACAATATCGAAGGGAAGGATGCGAGTAGGGAGTGAACAAaaaatggt
tgttttctttGAGCATGATGGTTCTGGGTCTGGTGAAGAAGAATGCTCTT
GAAGGATAATTTGGAGGCTGAAGACCTTACATAAATGCATTTGCTGtttc
tttagcttttttgacaatattagttagaagggattgttttcctcaaggcc
cacaaacaaattctagctttgattttttggaaattttattcaacttgATG
CCTGATACCTGAAGCTTGAAGTAGCATCTAAAGGTAAGGTTTACATTCAC
TGCATTTTGTAGTTTCTTTTATGTTAGCAGGAATCAGTGTCAGTTGAGAc
tgaaatattgactttttccCAGTTCTGTCAAGTGTGATTTTGTGCacgtc
aaaaatcttcaatctctgcatagctgtcaacttcgcctCACAAAAATACG
GGAGAGCTtcaagtcggaaaaattttccccgataatccgatttttcaaaa
tcggaaaatcgggaaatcggggaaattttctcgtaaaatccgattttatt
ggaaatttttttcggg Coding sequence (CDS) from alignment at sc0003538:5804..7019 >TCONS_00042612 ID=TCONS_00042612|Name=TCONS_00042612|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0003538:5804..7019 (Clytia hemisphaerica)
ttataaaacgtaatatgtttcgcggcggatagagtctgtgtttacggaCG
ATATCAATTTGGCGCTTTTCTTGATTTCATCTTTGCCCTTACCGACCTTG
GAGAAGGGTCGGTGATTTTTGCGGAAAATCCCTGCAGATTTATAGACGAA
CTTGGTAGAGAAAACAATATCGAAGGGAAGGATGCGAGTAGGGAGTGAAC
AAaaaatggttgttttctttGAGCATGATGGTTCTGGGTCTGGTGAAGAA
GAATGCTCTTGAAGGATAATTTGGAGGCTGAAGACCTTACATAAATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042612-exon-sc0003538-1491911889:5804..7019 | TCONS_00042612-exon-sc0003538-1491911889:5804..7019 | Clytia hemisphaerica | exon |
| TCONS_00042612-exon-sc0003538-1510915933:5804..7019 | TCONS_00042612-exon-sc0003538-1510915933:5804..7019 | Clytia hemisphaerica | exon |
| TCONS_00042612-exon-sc0003538-1575043694:5804..7019 | TCONS_00042612-exon-sc0003538-1575043694:5804..7019 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003538 | supercontig | sc0003538:5804..7019 . |
Blast
The following BLAST results are available for this feature:
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