TCONS_00042610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042610
Unique NameTCONS_00042610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042610 ID=TCONS_00042610|Name=TCONS_00042610|organism=Clytia hemisphaerica|type=transcript|length=366bp
NCCAAAAACTTTCACCAAGTAAGAATGATAGGGGAAATGTTCGAATggtc
attgagacaggggtgtacagaTATCGATAAAATCAGCGTGTTAATGACAA
GAGAAGGATACACCGGCATAATCAGTGTGTCACTGTAACAAGGTTAAACG
GAAACTCTCGCCGGATCAGTAAGTTATGCGTAGACAGAAATAATTACCGG
GTCACAGAGATGGGGTTGGGCGAGCCAATGTCAAAAGAATGATATCTCCA
ATCATCTAATCAGGATAAGTTGATAGAGGTCCGCTGCTGTTTTTCGGTGG
ATTTGAAGAAAAGCTGGATCCGATTCGCTTCCAAGATGGTATGTTCCGGA
GGTTACCTAGCGGGTG
Run BLAST on NCBI

transcript from alignment at sc0003537:1..366

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042610 ID=TCONS_00042610|Name=TCONS_00042610|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at sc0003537:1..366 (Clytia hemisphaerica)
CACCCGCTAGGTAACCTCCGGAACATACCATCTTGGAAGCGAATCGGATC
CAGCTTTTCTTCAAATCCACCGAAAAACAGCAGCGGACCTCTATCAACTT
ATCCTGATTAGATGATTGGAGATATCATTCTTTTGACATTGGCTCGCCCA
ACCCCATCTCTGTGACCCGGTAATTATTTCTGTCTACGCATAACTTACTG
ATCCGGCGAGAGTTTCCGTTTAACCTTGTTACAGTGACACACTGATTATG
CCGGTGTATCCTTCTCTTGTCATTAACACGCTGATTTTATCGATAtctgt
acacccctgtctcaatgaccATTCGAACATTTCCCCTATCATTCTTACTT
GGTGAAAGTTTTTGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026426XLOC_026426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042610-exon-sc0003537-1491911889:1..366TCONS_00042610-exon-sc0003537-1491911889:1..366Clytia hemisphaericaexon
TCONS_00042610-exon-sc0003537-1510915933:1..366TCONS_00042610-exon-sc0003537-1510915933:1..366Clytia hemisphaericaexon
TCONS_00042610-exon-sc0003537-1575043694:1..366TCONS_00042610-exon-sc0003537-1575043694:1..366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003537supercontigsc0003537:1..366 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.779508	1.00509	5.76206	7.68366	0	0	0	0	0	0.243345	0.474725	1.07099	1.22742	1.43509	0.133305	0.58828	0.179079	0.373063	1.29338	0.251367	0.923116	1.06024	1.16491	0.813495	0	0	0.324362	0.330684	0.946311	0.859296
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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