TCONS_00042608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042608
Unique NameTCONS_00042608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042608 ID=TCONS_00042608|Name=TCONS_00042608|organism=Clytia hemisphaerica|type=transcript|length=624bp
TTTATGTTATACTTAGAGCATATCAAAAACGCAGTTTTCCGTGACGAAAC
AACGATAAAGAGTTctacatttaaaaattttatgctTGCATATGATTCGT
TTGTATGGATGCAAAACTTTAACTTTCATGAAACAAACGTCGAAAATTTA
ATTATTAGTCGAGACTCGTCTTTAACAATTAGCAGATTTGAATTGCACAA
TACAACAATAAACGAATGGGCATGCTTTTTATGGAATAGCAATTACAATG
TAAATGAAGCTCGAGTTGTGGACAGTGTTCTGAAGATGCGTCTCGTCAGT
TCTCTAATATCGAGTAATGTAACAATTCAAAGCATCGAATTGCAGAATAC
AACAGTTTATGGACCCACATTCTTCGTATCGGAAAGCATCTTCAAGGCAA
ATGAAATCCGAGTGGTTGACTGTGTTATGGAAGAGAAATTCTACGTATGG
GGAGGCATCTTCAACGCAAATAAAATCCGAATTGTTGACTCTACATTAAA
AGGATTGGCGTATTTAAGAACTAAAAGTAATATCACCATAAAATATATAT
CTATGAACAAGACtgatataaaagaaacatttgTCGCTTCATATGAATTC
AGTAAATCCACGATTACAAATGTA
Run BLAST on NCBI

protein sequence of TCONS_00042608-protein

>TCONS_00042608-protein ID=TCONS_00042608-protein|Name=TCONS_00042608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
FMLYLEHIKNAVFRDETTIKSSTFKNFMLAYDSFVWMQNFNFHETNVENL
IISRDSSLTISRFELHNTTINEWACFLWNSNYNVNEARVVDSVLKMRLVS
SLISSNVTIQSIELQNTTVYGPTFFVSESIFKANEIRVVDCVMEEKFYVW
GGIFNANKIRIVDSTLKGLAYLRTKSNITIKYISMNKTDIKETFVASYEF
SKSTITNV
Run BLAST on NCBI

transcript from alignment at sc0003535:20290..20913

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042608 ID=TCONS_00042608|Name=TCONS_00042608|organism=Clytia hemisphaerica|type=transcript|length=624bp|location=Sequence derived from alignment at sc0003535:20290..20913 (Clytia hemisphaerica)
TACATTTGTAATCGTGGATTTACTGAATTCATATGAAGCGAcaaatgttt
cttttatatcaGTCTTGTTCATAGATATATATTTTATGGTGATATTACTT
TTAGTTCTTAAATACGCCAATCCTTTTAATGTAGAGTCAACAATTCGGAT
TTTATTTGCGTTGAAGATGCCTCCCCATACGTAGAATTTCTCTTCCATAA
CACAGTCAACCACTCGGATTTCATTTGCCTTGAAGATGCTTTCCGATACG
AAGAATGTGGGTCCATAAACTGTTGTATTCTGCAATTCGATGCTTTGAAT
TGTTACATTACTCGATATTAGAGAACTGACGAGACGCATCTTCAGAACAC
TGTCCACAACTCGAGCTTCATTTACATTGTAATTGCTATTCCATAAAAAG
CATGCCCATTCGTTTATTGTTGTATTGTGCAATTCAAATCTGCTAATTGT
TAAAGACGAGTCTCGACTAATAATTAAATTTTCGACGTTTGTTTCATGAA
AGTTAAAGTTTTGCATCCATACAAACGAATCATATGCAagcataaaattt
ttaaatgtagAACTCTTTATCGTTGTTTCGTCACGGAAAACTGCGTTTTT
GATATGCTCTAAGTATAACATAAA

Coding sequence (CDS) from alignment at sc0003535:20290..20913

>TCONS_00042608 ID=TCONS_00042608|Name=TCONS_00042608|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0003535:20290..20913 (Clytia hemisphaerica)
TACATTTGTAATCGTGGATTTACTGAATTCATATGAAGCGAcaaatgttt
cttttatatcaGTCTTGTTCATAGATATATATTTTATGGTGATATTACTT
TTAGTTCTTAAATACGCCAATCCTTTTAATGTAGAGTCAACAATTCGGAT
TTTATTTGCGTTGAAGATGCCTCCCCATACGTAGAATTTCTCTTCCATAA
CACAGTCAACCACTCGGATTTCATTTGCCTTGAAGATGCTTTCCGATACG
AAGAATGTGGGTCCATAAACTGTTGTATTCTGCAATTCGATGCTTTGAAT
TGTTACATTACTCGATATTAGAGAACTGACGAGACGCATCTTCAGAACAC
TGTCCACAACTCGAGCTTCATTTACATTGTAATTGCTATTCCATAAAAAG
CATGCCCATTCGTTTATTGTTGTATTGTGCAATTCAAATCTGCTAATTGT
TAAAGACGAGTCTCGACTAATAATTAAATTTTCGACGTTTGTTTCATGAA
AGTTAAAGTTTTGCATCCATACAAACGAATCATATGCAagcataaaattt
ttaaatgtagAACTCTTTATCGTTGTTTCGTCACGGAAAACTGCGTTTTT
GATATGCTCTAAGTATAACATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026424XLOC_026424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042608-exon-sc0003535-1491911889:20290..20913TCONS_00042608-exon-sc0003535-1491911889:20290..20913Clytia hemisphaericaexon
TCONS_00042608-exon-sc0003535-1510915933:20290..20913TCONS_00042608-exon-sc0003535-1510915933:20290..20913Clytia hemisphaericaexon
TCONS_00042608-exon-sc0003535-1575043694:20290..20913TCONS_00042608-exon-sc0003535-1575043694:20290..20913Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042608-proteinTCONS_00042608-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003535supercontigsc0003535:20290..20913 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.130076	0	0	0.0726616	0.613311	0	0.0779146	0.119761	0.0738762	0.162549	1.3245	1.77117	0	0	0	0	0.0917853	0.0425106	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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