TCONS_00042606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042606
Unique NameTCONS_00042606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042606 ID=TCONS_00042606|Name=TCONS_00042606|organism=Clytia hemisphaerica|type=transcript|length=335bp
CAATGACTTGCATTTTGTTTTGTAGCTAGCTGTGCTTTTTTTGCTGaaca
agaaaacagaaaaaggtATAAATATTCAAATATCTATGAAAATGTCTAAG
AAAAATCATGATGACCCTTCTTCGGAAGGAATATCTCAGAAATTTATTGA
GCCTTCTTCAGTTTCTGATGAAGGAATTTCTCAGAAAATTATTGATGAGC
TTTCTTCAGAGGAAGAACAGATAGATCAGGAGAGGTACGTGTACAAAAAT
GATAGAGGTAATAGAGACTTACATTTTATGAATTTGTGTAGACACCAAGA
TTCAGTGTATACATGTGCAGTAGACTCATTTTTGG
Run BLAST on NCBI

transcript from alignment at sc0003534:3272..3606

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042606 ID=TCONS_00042606|Name=TCONS_00042606|organism=Clytia hemisphaerica|type=transcript|length=335bp|location=Sequence derived from alignment at sc0003534:3272..3606 (Clytia hemisphaerica)
CCAAAAATGAGTCTACTGCACATGTATACACTGAATCTTGGTGTCTACAC
AAATTCATAAAATGTAAGTCTCTATTACCTCTATCATTTTTGTACACGTA
CCTCTCCTGATCTATCTGTTCTTCCTCTGAAGAAAGCTCATCAATAATTT
TCTGAGAAATTCCTTCATCAGAAACTGAAGAAGGCTCAATAAATTTCTGA
GATATTCCTTCCGAAGAAGGGTCATCATGATTTTTCTTAGACATTTTCAT
AGATATTTGAATATTTATacctttttctgttttcttgttCAGCAAAAAAA
GCACAGCTAGCTACAAAACAAAATGCAAGTCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026422XLOC_026422Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042606-exon-sc0003534-1491911889:3272..3606TCONS_00042606-exon-sc0003534-1491911889:3272..3606Clytia hemisphaericaexon
TCONS_00042606-exon-sc0003534-1510915933:3272..3606TCONS_00042606-exon-sc0003534-1510915933:3272..3606Clytia hemisphaericaexon
TCONS_00042606-exon-sc0003534-1575043694:3272..3606TCONS_00042606-exon-sc0003534-1575043694:3272..3606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003534supercontigsc0003534:3272..3606 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12626	1.09828	1.01315	0.623797	1.13912	1.34804	1.08599	1.28216	0.285679	0.587793	0.285263	1.58504	0	0.723824	0.393027	1.58786	0.518868	0.777353	0	0.626413	3.06486	1.99179	0.854663	0.880517	0.302304	1.349	0.772163	0.412037	1.60096	0.807565
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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