TCONS_00042604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042604
Unique NameTCONS_00042604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042604 ID=TCONS_00042604|Name=TCONS_00042604|organism=Clytia hemisphaerica|type=transcript|length=295bp
NAAACTGCCTTCATATCTAACAGTTGATCGTCAACACTATTGGAAATCAT
CTAATCAGAAAGATGAACTCAAAGATAATCAAATGATGAGCTTCAAAGAC
TTTAGGacacttttaaacttttgaggACGACCTGGCTGGCCTACAGTACC
AAAAGAAAGATGAGTTAAAGAACTAATATGTTGTAAATGTTTTGATTATC
ATTTATTATGGCTGATCACTTTTCTACTTAACTTTGGTGTTTACAAAACT
TGCAGATATATGAAActctaaaaaggctgatttcatAAATGGTGG
Run BLAST on NCBI

transcript from alignment at sc0003532:3878..4172

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042604 ID=TCONS_00042604|Name=TCONS_00042604|organism=Clytia hemisphaerica|type=transcript|length=295bp|location=Sequence derived from alignment at sc0003532:3878..4172 (Clytia hemisphaerica)
CCACCATTTatgaaatcagcctttttagagTTTCATATATCTGCAAGTTT
TGTAAACACCAAAGTTAAGTAGAAAAGTGATCAGCCATAATAAATGATAA
TCAAAACATTTACAACATATTAGTTCTTTAACTCATCTTTCTTTTGGTAC
TGTAGGCCAGCCAGGTCGTcctcaaaagtttaaaagtgtCCTAAAGTCTT
TGAAGCTCATCATTTGATTATCTTTGAGTTCATCTTTCTGATTAGATGAT
TTCCAATAGTGTTGACGATCAACTGTTAGATATGAAGGCAGTTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026420XLOC_026420Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042604-exon-sc0003532-1491911889:3878..4172TCONS_00042604-exon-sc0003532-1491911889:3878..4172Clytia hemisphaericaexon
TCONS_00042604-exon-sc0003532-1510915933:3878..4172TCONS_00042604-exon-sc0003532-1510915933:3878..4172Clytia hemisphaericaexon
TCONS_00042604-exon-sc0003532-1575043694:3878..4172TCONS_00042604-exon-sc0003532-1575043694:3878..4172Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003532supercontigsc0003532:3878..4172 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.633296	0.40132	0.465971	0.651527	0.705288	2.65335	1.52718	0.586062	1.13742	1.01222	2.41563	0	1.6057	3.28946	2.82788	3.0094	2.79404	0.990019	6.89101	10.1994	3.5038	3.55035	2.45399	3.80865	1.32557	2.10686	14.0074	11.4511	15.4494	23.6774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top