TCONS_00042600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042600
Unique NameTCONS_00042600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042600 ID=TCONS_00042600|Name=TCONS_00042600|organism=Clytia hemisphaerica|type=transcript|length=642bp
NNGCATCTTCACAGATTATCTCAGTACTTGCAAGGGAGATAATGATAGAG
ATTTAATACAGATTTCTGAGCAAAGATTATTATCAGTCAAGGATGCATGT
ACAAGTAGAGGAGACGCCAACTTAAATGTTATACTAGAAAGCTCTGAACT
ATTTACTGCACACAGAAATTGTTTATCTACGTATACATCAAAATCACATA
TTGACCGTCACTTGAAGCGCAAAGAAACAAAGGACAACCCTACGCAACCA
AAACGAAGGAAGATTTCCCGGAAGCCTTTCTTCTGGAAAGAACAGTGTTT
CTTTTCCGGGGAGAAATGCGAAGTAAAAGTCGACAAGAGGAATCCTAGCC
GGTGGAGAGAATCGTATGAATGTAGAACAGCAGACAGGGGAAAAGGACAA
GTCTTAAAAGTTTGCGACGAACGAGGTGATGATTGGGCAGATGAAGTACA
ATTAAGACTGAGTGATACGAGAGCAGCGTCCGATTTGCACGCTGCTTTTG
GGAGGTATTTTTTACCACTTGACTTGATTCGTTGAAGTTTCTGAGAGGGA
CAGACGAATCAACTTCTAATTTTGTggaccagggggggggggcttcaaCG
CATGGAATCTTTCTATCAATCGAAAGAGATCACCAACCTAGC
Run BLAST on NCBI

protein sequence of TCONS_00042600-protein

>TCONS_00042600-protein ID=TCONS_00042600-protein|Name=TCONS_00042600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
XIFTDYLSTCKGDNDRDLIQISEQRLLSVKDACTSRGDANLNVILESSEL
FTAHRNCLSTYTSKSHIDRHLKRKETKDNPTQPKRRKISRKPFFWKEQCF
FSGEKCEVKVDKRNPSRWRESYECRTADRGKGQVLKVCDERGDDWADEVQ
LRLSDTRAASDLHAAFGRYFLPLDLIR
Run BLAST on NCBI

transcript from alignment at sc0003526:9705..10479+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042600 ID=TCONS_00042600|Name=TCONS_00042600|organism=Clytia hemisphaerica|type=transcript|length=775bp|location=Sequence derived from alignment at sc0003526:9705..10479+ (Clytia hemisphaerica)
NNGCATCTTCACAGATTATCTCAGTACTTGCAAGGGAGATAATGATAGAG
ATTTAATACAGATTTCTGAGCAAAGATTATTATCAGTCAAGGATGCATGT
ACAAGTAGAGGAGACGCCAACTTAAATGTTATACTAGAAAGCTCTGAACT
ATTTACTGCACACAGAAATTGTTTATCTACGTATACATCAAAATCACATA
TTGACCGTCACTTGAAGCGCAAAGAAACAAAGGACAACCCTACGCAACCA
AAACGAAGGAAGATTTCCCGGAAGCCTTTCTTCTGGAAAGAACAGTGTTT
CTTTTCCGGGGAGAAATGCGAAGTAAAAGTCGACAAGAGGAATCCTAGCC
GGTGGAGAGAATCGTATGAATGTAGAACAGCAGACAGGGGAAAAGGACAA
GTCTTAAAAGTAACTATTTTTGCCATTATAGTCTTTTTTAGACAACAAGT
GTAACACGTGTAATTGATAGACGTTTTAGATCTTGTGACATAAATCTTTG
CTTAGCCCCGAAGATCTAAAATGATGACACACTTATTTACAGGTTTGCGA
CGAACGAGGTGATGATTGGGCAGATGAAGTACAATTAAGACTGAGTGATA
CGAGAGCAGCGTCCGATTTGCACGCTGCTTTTGGGAGGTATTTTTTACCA
CTTGACTTGATTCGTTGAAGTTTCTGAGAGGGACAGACGAATCAACTTCT
AATTTTGTggaccagggggggggggcttcaaCGCATGGAATCTTTCTATC
AATCGAAAGAGATCACCAACCTAGC

Coding sequence (CDS) from alignment at sc0003526:9705..10479+

>TCONS_00042600 ID=TCONS_00042600|Name=TCONS_00042600|organism=Clytia hemisphaerica|type=CDS|length=1068bp|location=Sequence derived from alignment at sc0003526:9705..10479+ (Clytia hemisphaerica)
NGCATCTTCACAGATTATCTCAGTACTTGCAAGGGAGATAATGATAGAGA
TTTAATACAGATTTCTGAGCAAAGATTATTATCAGTCAAGGATGCATGTA
CAAGTAGAGGAGACGCCAACTTAAATGTTATACTAGAAAGCTCTGAACTA
TTTACTGCACACAGAAATTGTTTATCTACGTATACATCAAAATCACATAT
TGACCGTCACTTGAAGCGCAAAGAAACAAAGGACAACCCTACGCAACCAA
AACGAAGGAAGATTTCCCGGAAGCCTTTCTTCTGGAAAGAACAGTGTTTC
TTTTCCGGGGAGAAATGCGAAGTAAAAGTCGACAAGAGGAATCCTAGCCG
GTGGAGAGAATCGTATGAATGTAGAACAGCAGACAGGGGAAAAGGACAAG
TCTTAAAAGTTTGCGACGAACGAGGTGATGATTGGGCAGATGAAGTACAA
TTAAGACTGAGTGATACGAGAGCAGCGTCCGATTTGCACGCTGCTTTTGG
GAGGTATTTTTTACCACTTGACTTGATTCGTTGANGCATCTTCACAGATT
ATCTCAGTACTTGCAAGGGAGATAATGATAGAGATTTAATACAGATTTCT
GAGCAAAGATTATTATCAGTCAAGGATGCATGTACAAGTAGAGGAGACGC
CAACTTAAATGTTATACTAGAAAGCTCTGAACTATTTACTGCACACAGAA
ATTGTTTATCTACGTATACATCAAAATCACATATTGACCGTCACTTGAAG
CGCAAAGAAACAAAGGACAACCCTACGCAACCAAAACGAAGGAAGATTTC
CCGGAAGCCTTTCTTCTGGAAAGAACAGTGTTTCTTTTCCGGGGAGAAAT
GCGAAGTAAAAGTCGACAAGAGGAATCCTAGCCGGTGGAGAGAATCGTAT
GAATGTAGAACAGCAGACAGGGGAAAAGGACAAGTCTTAAAAGTTTGCGA
CGAACGAGGTGATGATTGGGCAGATGAAGTACAATTAAGACTGAGTGATA
CGAGAGCAGCGTCCGATTTGCACGCTGCTTTTGGGAGGTATTTTTTACCA
CTTGACTTGATTCGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026416XLOC_026416Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042600-proteinTCONS_00042600-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042600-exon-sc0003526-1491911889:9705..10113TCONS_00042600-exon-sc0003526-1491911889:9705..10113Clytia hemisphaericaexon
TCONS_00042600-exon-sc0003526-1510915933:9705..10113TCONS_00042600-exon-sc0003526-1510915933:9705..10113Clytia hemisphaericaexon
TCONS_00042600-exon-sc0003526-1575043694:9705..10113TCONS_00042600-exon-sc0003526-1575043694:9705..10113Clytia hemisphaericaexon
TCONS_00042600-exon-sc0003526-1491911889:10247..10479TCONS_00042600-exon-sc0003526-1491911889:10247..10479Clytia hemisphaericaexon
TCONS_00042600-exon-sc0003526-1510915933:10247..10479TCONS_00042600-exon-sc0003526-1510915933:10247..10479Clytia hemisphaericaexon
TCONS_00042600-exon-sc0003526-1575043694:10247..10479TCONS_00042600-exon-sc0003526-1575043694:10247..10479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003526supercontigsc0003526:9705..10479 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.573543	1.11859	0.834936	0.54457	0.552468	0.436568	1.36942	0.887563	1.17376	1.71046	3.15441	0.763953	0.762891	0.848861	0.744404	1.19829	0.861113	1.51305	1.04518	0.729138	1.58438	1.15921	0.845503	0.341638	1.23158	0.392554	0.449395	0.359705	0.181882	0.370619
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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