TCONS_00042597 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042597
Unique NameTCONS_00042597
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042597 ID=TCONS_00042597|Name=TCONS_00042597|organism=Clytia hemisphaerica|type=transcript|length=514bp
TTCAGAACTTGGTATACCCATGGCGTGCTATTTTCTCATCAATTCATGTT
TGGGCCATTATTATAACTCATATTTGCAAAAACTGGGTTTGGTACATGGT
TTTAACTGGTTTACCGTCATactttaaaaatgttctcaattttgacatta
aaaagAATGGATTTTTATCAGCCCTTCCATACATTGCTGGAATGATTTTC
CAATTCGTTGGAGGATTTTTAGCGGATTTTCTTCAAAACAACAAACTCTC
CAAACAAACAACTAAAAGAATTATGACCGTCTTTGGTGAGTAGATTTTAC
TATTGGATCGTCTAATGaccaaattattattattattattattacaacgA
ATACAAAGTTCAGGCACGCCGTGGGCCTCTAGAACtggtctttgtttatt
tacaataaatatCGTAGTTCATGGTTTGCCCATGCTTTGTTTAAATTATT
CTTGAACGATTTTATCGATGATGCTTCTGCCACGTATTTTGGAAGCGCGT
TCCATGTTGAGATA
Run BLAST on NCBI

transcript from alignment at sc0003524:8830..9752-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042597 ID=TCONS_00042597|Name=TCONS_00042597|organism=Clytia hemisphaerica|type=transcript|length=923bp|location=Sequence derived from alignment at sc0003524:8830..9752- (Clytia hemisphaerica)
TTCAGAACTTGGTATACCCATGGCGTGCTATTTTCTCATCAATTCATGTT
TGGGCCATTATTATAACTCATATTTGCAAAAACTGGGTTTGGTACATGGT
TTTAACTGGTTTACCGTCATACTTTAAAAATGTTCTCAATTTTGACATTA
AAAAGGTAAGTCTAAAGATATTTCAACTATGAAAATTATTGATGAGAAAC
TTCTTAAAGACAACTTGTTGATTTAGTAGCTTGAATTTGGGGCTGCGCTT
GAGAAACTTAGCCAACCAAGAGTGTGCTCGACCATAGTCTGTATAAAAAA
CCCCGGTCTGGAAGCCTTTTGTTTTTCTTCATTGTTCCTTATAAATTGAA
CTTGCGTTTGAGAAATTAGTTTGTTTTGCTCGCTTTTTGATCATGTGATG
AAATCTTAAACCAATCCCAAGAGGAATTCTTGGTAACGTGATCAAAAACT
GAGCGTAAAAAATTGAAACAATAATCTTCAAGACCAGAGTTTTTTATATA
GACTATGGCTCTACAGACTGTACTGTGATTTTGAGAGTATCAACAAAATT
CCCTTATTTCATAGAATGGATTTTTATCAGCCCTTCCATACATTGCTGGA
ATGATTTTCCAATTCGTTGGAGGATTTTTAGCGGATTTTCTTCAAAACAA
CAAACTCTCCAAACAAACAACTAAAAGAATTATGACCGTCTTTGGTGAGT
AGATTTTACTATTGGATCGTCTAATGACCAAATTATTATTATTATTATTA
TTACAACGAATACAAAGTTCAGGCACGCCGTGGGCCTCTAGAACTGGTCT
TTGTTTATTTACAATAAATATCGTAGTTCATGGTTTGCCCATGCTTTGTT
TAAATTATTCTTGAACGATTTTATCGATGATGCTTCTGCCACGTATTTTG
GAAGCGCGTTCCATGTTGAGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026413XLOC_026413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042597-exon-sc0003524-1575043694:9598..9752TCONS_00042597-exon-sc0003524-1575043694:9598..9752Clytia hemisphaericaexon
TCONS_00042597-exon-sc0003524-1575043694:8830..9188TCONS_00042597-exon-sc0003524-1575043694:8830..9188Clytia hemisphaericaexon
TCONS_00042597-exon-sc0003524-1510915933:9598..9752TCONS_00042597-exon-sc0003524-1510915933:9598..9752Clytia hemisphaericaexon
TCONS_00042597-exon-sc0003524-1510915933:8830..9188TCONS_00042597-exon-sc0003524-1510915933:8830..9188Clytia hemisphaericaexon
TCONS_00042597-exon-sc0003524-1491911889:9598..9752TCONS_00042597-exon-sc0003524-1491911889:9598..9752Clytia hemisphaericaexon
TCONS_00042597-exon-sc0003524-1491911889:8830..9188TCONS_00042597-exon-sc0003524-1491911889:8830..9188Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003524supercontigsc0003524:8830..9752 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97745	2.01531	3.1609	3.479	3.29416	1.9833	3.14051	6.67826	2.39285	2.09283	1.95886	2.01419	4.67702	3.0464	2.76221	3.39514	1.82642	2.42093	2.62931	1.69759	3.9738	5.51265	6.03443	7.28394	3.62176	5.65473	1.27599	0.552937	6.19656	4.74116
Blast
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BLAST of TCONS_00042597 vs. Swiss-Prot (Human)
Match: VGLU2 (Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.079e-19
Identity = 38/91 (41.76%), Postives = 61/91 (67.03%), Query Frame = 3 
Query:   18 PWRAIFSSIHVWAIIITHICKNWVWYMVLTGLPSYFKNVLNFDIKKNGFLSALPYIAGMIFQFVGGFLADFLQNNK-LSKQTTKRIMTVFG 287
            PWR  F+S+ V+AII+ + C++W +Y++L   P+YF+ V  F+I K G LSA+P++   I   +GG +ADFL++ + LS  T ++IM   G
Sbjct:  302 PWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTIIVPIGGQIADFLRSKQILSTTTVRKIMNCGG 392
The following BLAST results are available for this feature:
BLAST of TCONS_00042597 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VGLU28.079e-1941.76Vesicular glutamate transporter 2 OS=Homo sapiens ... [more]
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