TCONS_00042595 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042595
Unique NameTCONS_00042595
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042595 ID=TCONS_00042595|Name=TCONS_00042595|organism=Clytia hemisphaerica|type=transcript|length=727bp
AGGGCACTTTTTGGTGCATCTTTCATGGTACAAGAGCCGTATGATTGTCC
TTTTGGAATTTCGCTTGGGCATTTGCTGTTGGTTAAGTGTTGTTCAATGT
ATTTTTTCTTTACCAATGACTTGAGCATCGAAGGTCCGAAGGGTCAATTC
CTTGATTTTTAACGTTGTCTTCTTCCAATACTTGCATTTAGCCACTTTTC
CATCAGGGTGTGTACTGACAAAACGATGTCCACTTTTTCTTTCAAGAGGG
TTTCCATTGTATGTTTTCGTATTGAATGCTTGGATACAATCAGATGGACT
GATAAAGATTTCTTCCGAATTAGACGTCTCCTTTTTGGAGGAAACTTTTC
TGCTCCATGCAACTCTTGGTTTCCAATCGCAAATTGTGGTGGTTTTGTAT
AACGTGCAGTAATGGATGTTAAAGTGAGTGATGTTCGGCGAGTACTTAAA
GACCTCCATTTCTTTCGTTATAAGCtctgatttttttgtcatagaATGAG
TACATGTAGGTATTTTTGGGAATTCGTATATTCCTAGTGGAGTAGTGGTG
GTGCAATCGTAGAGATTTCCCAGTCTTGATCCAAATATTATTGGCATGAA
CATAAGGACCAGAAATAGTGACCATTTTAGCGAAGCGGGCTGGCTTCTTC
TGTATGAGATGGTATTAATCGATAGATTGGGGTCTAGGAATCTCTTGACC
AACTCCGCATTTAAGTTTTCTTCAGGT
Run BLAST on NCBI

protein sequence of TCONS_00042595-protein

>TCONS_00042595-protein ID=TCONS_00042595-protein|Name=TCONS_00042595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
PEENLNAELVKRFLDPNLSINTISYRRSQPASLKWSLFLVLMFMPIIFGS
RLGNLYDCTTTTPLGIYEFPKIPTCTHSMTKKSELITKEMEVFKYSPNIT
HFNIHYCTLYKTTTICDWKPRVAWSRKVSSKKETSNSEEIFISPSDCIQA
FNTKTYNGNPLERKSGHRFVSTHPDGKVAKCKYWKKTTLKIKELTLRTFD
AQVIGKEKIH
Run BLAST on NCBI

transcript from alignment at sc0003520:8902..9628

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042595 ID=TCONS_00042595|Name=TCONS_00042595|organism=Clytia hemisphaerica|type=transcript|length=727bp|location=Sequence derived from alignment at sc0003520:8902..9628 (Clytia hemisphaerica)
ACCTGAAGAAAACTTAAATGCGGAGTTGGTCAAGAGATTCCTAGACCCCA
ATCTATCGATTAATACCATCTCATACAGAAGAAGCCAGCCCGCTTCGCTA
AAATGGTCACTATTTCTGGTCCTTATGTTCATGCCAATAATATTTGGATC
AAGACTGGGAAATCTCTACGATTGCACCACCACTACTCCACTAGGAATAT
ACGAATTCCCAAAAATACCTACATGTACTCATtctatgacaaaaaaatca
gaGCTTATAACGAAAGAAATGGAGGTCTTTAAGTACTCGCCGAACATCAC
TCACTTTAACATCCATTACTGCACGTTATACAAAACCACCACAATTTGCG
ATTGGAAACCAAGAGTTGCATGGAGCAGAAAAGTTTCCTCCAAAAAGGAG
ACGTCTAATTCGGAAGAAATCTTTATCAGTCCATCTGATTGTATCCAAGC
ATTCAATACGAAAACATACAATGGAAACCCTCTTGAAAGAAAAAGTGGAC
ATCGTTTTGTCAGTACACACCCTGATGGAAAAGTGGCTAAATGCAAGTAT
TGGAAGAAGACAACGTTAAAAATCAAGGAATTGACCCTTCGGACCTTCGA
TGCTCAAGTCATTGGTAAAGAAAAAATACATTGAACAACACTTAACCAAC
AGCAAATGCCCAAGCGAAATTCCAAAAGGACAATCATACGGCTCTTGTAC
CATGAAAGATGCACCAAAAAGTGCCCT

Coding sequence (CDS) from alignment at sc0003520:8902..9628

>TCONS_00042595 ID=TCONS_00042595|Name=TCONS_00042595|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at sc0003520:8902..9628 (Clytia hemisphaerica)
CCTGAAGAAAACTTAAATGCGGAGTTGGTCAAGAGATTCCTAGACCCCAA
TCTATCGATTAATACCATCTCATACAGAAGAAGCCAGCCCGCTTCGCTAA
AATGGTCACTATTTCTGGTCCTTATGTTCATGCCAATAATATTTGGATCA
AGACTGGGAAATCTCTACGATTGCACCACCACTACTCCACTAGGAATATA
CGAATTCCCAAAAATACCTACATGTACTCATtctatgacaaaaaaatcag
aGCTTATAACGAAAGAAATGGAGGTCTTTAAGTACTCGCCGAACATCACT
CACTTTAACATCCATTACTGCACGTTATACAAAACCACCACAATTTGCGA
TTGGAAACCAAGAGTTGCATGGAGCAGAAAAGTTTCCTCCAAAAAGGAGA
CGTCTAATTCGGAAGAAATCTTTATCAGTCCATCTGATTGTATCCAAGCA
TTCAATACGAAAACATACAATGGAAACCCTCTTGAAAGAAAAAGTGGACA
TCGTTTTGTCAGTACACACCCTGATGGAAAAGTGGCTAAATGCAAGTATT
GGAAGAAGACAACGTTAAAAATCAAGGAATTGACCCTTCGGACCTTCGAT
GCTCAAGTCATTGGTAAAGAAAAAATACATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026411XLOC_026411Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042595-proteinTCONS_00042595-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042595-exon-sc0003520-1491911889:8902..9628TCONS_00042595-exon-sc0003520-1491911889:8902..9628Clytia hemisphaericaexon
TCONS_00042595-exon-sc0003520-1510915933:8902..9628TCONS_00042595-exon-sc0003520-1510915933:8902..9628Clytia hemisphaericaexon
TCONS_00042595-exon-sc0003520-1575043694:8902..9628TCONS_00042595-exon-sc0003520-1575043694:8902..9628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003520supercontigsc0003520:8902..9628 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.163787	0.371258	0.33617	0.167041	0.0923624	0.405753	0.176109	0.164871	0.0577151	0.285958	0.208168	0.0456139	1.47073	2.14967	0.320303	0.585839	0.462736	0.158096	2.49345	4.29603	0.483144	0.463445	0	0	1.34161	0.532413	0.751305	0.30068	0.228055	0.409001
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042595 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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