TCONS_00042594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042594
Unique NameTCONS_00042594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042594 ID=TCONS_00042594|Name=TCONS_00042594|organism=Clytia hemisphaerica|type=transcript|length=667bp
TCAGTGTCCAGAGGAGTAGTATTCTACTTatatttagaaaataattttgg
aAGAGTATCTTTAGAATGATAAGCATATGTGATGCACTATTCAATGGTTT
TGTCAGCCAACAAGGAATTGGAGCTGATCAACATTTCTGTGCAGAAACAA
TTActCAATTTGGATCAACAACGGTTCTTTTCTTGTACGTCTTGATAAAA
GCGACAACAATACACAAAGCGGCTGAAAAATGTGACCAAAGCCGATGGGT
TGAGTTAAATCCAAGAGCCTTTGCTGTGGAAACCATACAAGAGGCTTTTA
TTAACCTGCTCAGCAAAAATGGTTTGCGTGAGGCCGTTGAATTCAGTGCC
AATAAAATTTGCTACGTCAAGAAAATTGATCAGGATGGACATACAATCGT
TGATTGCTCCAAGGAAGCTCCGAGATACTATTTATGCCGATATGAGCGTG
TAGACGAATTCTGGCCATCCATCATTGGCATACCACTAGATCAAAATGGG
GATTATGAAGTTCTCGTTGAAGAAGGTATTTCTGGATATGGTTCCGTAGC
AGATGATTTCTTAGGTGCTAAAAAAAGGTGTGAAGCACGTGGCAAGGAAC
TTTTGACAATCGAAAGCGCAGCGAAAATGGAAACTCTTATCGATTTGATC
AACAACTTTGTTCAACC
Run BLAST on NCBI

protein sequence of TCONS_00042594-protein

>TCONS_00042594-protein ID=TCONS_00042594-protein|Name=TCONS_00042594-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MISICDALFNGFVSQQGIGADQHFCAETITQFGSTTVLFLYVLIKATTIH
KAAEKCDQSRWVELNPRAFAVETIQEAFINLLSKNGLREAVEFSANKICY
VKKIDQDGHTIVDCSKEAPRYYLCRYERVDEFWPSIIGIPLDQNGDYEVL
VEEGISGYGSVADDFLGAKKRCEARGKELLTIESAAKMETLIDLINNFVQ
Run BLAST on NCBI

transcript from alignment at sc0003517:5788..10872+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042594 ID=TCONS_00042594|Name=TCONS_00042594|organism=Clytia hemisphaerica|type=transcript|length=5085bp|location=Sequence derived from alignment at sc0003517:5788..10872+ (Clytia hemisphaerica)
TCAGTGTCCAGAGGAGTAGTATTCTACTTatatttagaaaataattttgg
aAGAGTATCTTTAGAATGATAAGCATATGTGATGCACTATTCAATGGTTT
TGTCAGCCAACAAGGAATTGGAGCTGATCAACATTTCTGTGCAGAAACAA
TTAGTAAATATAATTGACTCTTTTTAGCTCCCGGGGaaggtacggggacg
tgccactgGGCAGGGTCCCTATTTTAGGCTCTGAAgctatctgacagggt
ccaaaatttactaattttcgaGATGTGCGTCTGACAGGATCTACTTTTCG
AACTTTTCGAAGCaacacgtccccgtcggccatGGTAAGCAATCTTTCAG
TTTGAAAttcagaaagattcgaataatagaggttcgaattggAGAGAGTT
TAACTGTATGtacctaaagtctattcacgataagtgtgtgcactcttttt
tctttaacctataacttttgaaggaattcgtcaatttttataaatttggt
gtcatttgaaagatattagtgagtggaacaatttgaaataaaaaaatctt
ctaaaaaatcctgaaaatgaagatgaaaatattgactatattgatgctcc
tgtcaagttttctacttcctattttttactgagttaaggtctagcatgct
agactataggtaaaagaaaaaagagtgcacacttatcgtgaatagacttt
aaaataAAACGTTAATTTTGGCAGTTTTTCTCATtctcttttttcagttt
tttatcaCATGATTATCATGAACAAATTCTAAAACTAATCTGCATTGAAA
tccacatttaaaaaaatatgatacTATGGTTTAAAGGTACCAAGGTTACA
Ttagtttcatatcagacacatgtttcataccaggacagtgtctgcctatt
gttatattatactAATAtaaatataagcaaaaaatgtttttcttttcctc
tttctaactactcttgctccacatctgtatCAATTCAATGTTGAAAAGCT
TATAAATCTttataaaattgatgagtaagcaaacaagaAGCCGTagcggc
gtgaaggcccagctgacgtggcaataaccaaatgtcgtttgtattgggta
ccttaagagaaccaatgtttgcggaatcgtatttttgcaattttagggtt
tgaaagaaaacattgtGTCTTAGAATCCTANNNNNNNNNNNNNNNNNNNN
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ggttttaagcgccgtttctgcCTAAAGTGACacacggacggacagacaga
aaattgcaaatgaaaggcccactcgcttagcgctgggccaatgatatcac
tcttatttaaaaacaaaaccttcaaatctattttcaaatttcagctCAAT
TTGGATCAACAACGGTTCTTTTCTTGTACGTCTTGATAAAAGCGACAACA
ATACACAAAGCGGCTGAAAAATGTGACCAAAGCCGATGGGTTGAGTTAAA
TCCAAGAGCCTTTGCTGTGGAAACCATACAAGAGGCTTTTATTAACCTGC
TCAGCAAGTAAGAGTACTTGATGTAAAACGACCGTATACTCGACCCAAGA
GTCAATCCTTAGCggacaattttcatttttagcgaAATTCAATAGAGAGT
GCACGGTGTAAAAATGTATTACTAATTTTCTGGCTACTACTATATTTCAG
GTTCAAAATATTCGATATTTGTTCTTTTCCTTTAAGGCCGGTCTCCACTT
TCACGCGAAATGGTCGACAGTTTTTTTCTGAATCTTTTTTACCTGAAGAA
AAAATTACATCATAAAAAAGTTTTGTGCCGCGAACAAAAAAAAAGTTGAA
GGAAGTTCTATTTTTTCATCCGTTACGTCatttttgaccaatggaattgc
ttcatttttcaaccgaccaataaccttacaaaaacgtcaaagttttcgct
catgtcgcacGAAactggagaccggcctttagttGTTTAACTTGGCATCT
GTTCTACATAAACTCACTTACTTTCCTTTTTAAGAAATGGTTTGCGTGAG
GCCGTTGAATTCAGTGCCAATAAAATTTGCTACGTCAAGAAAATTGATCA
GGATGGACATACAATCGTTGATTGCTCCAAGGAAGCTCCGAGATACTATT
TATGCCGATATGAGCGTGTAGACGAATTCTGGCCATCCATCATTGGCATA
CCACTAGATCAAAATGGGGATTATGAAGTTCTCGTTGAAGAAGGTATTTC
TGGATATGGTTCCGTAGCAGATGATTTCTTAGGTGCTAAAAAAAGGTGTG
AAGCACGTGGCAAGGAACTTTTGACAATCGAAAGCGCAGCGAAAATGGAA
ACTCTTATCGATTTGATCAACAACTTTGTTCAACC

Coding sequence (CDS) from alignment at sc0003517:5788..10872+

>TCONS_00042594 ID=TCONS_00042594|Name=TCONS_00042594|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0003517:5788..10872+ (Clytia hemisphaerica)
ATGATAAGCATATGTGATGCACTATTCAATGGTTTTGTCAGCCAACAAGG
AATTGGAGCTGATCAACATTTCTGTGCAGAAACAATTActCAATTTGGAT
CAACAACGGTTCTTTTCTTGTACGTCTTGATAAAAGCGACAACAATACAC
AAAGCGGCTGAAAAATGTGACCAAAGCCGATGGGTTGAGTTAAATCCAAG
AGCCTTTGCTGTGGAAACCATACAAGAGGCTTTTATTAACCTGCTCAGCA
AAAATGGTTTGCGTGAGGCCGTTGAATTCAGTGCCAATAAAATTTGCTAC
GTCAAGAAAATTGATCAGGATGGACATACAATCGTTGATTGCTCCAAGGA
AGCTCCGAGATACTATTTATGCCGATATGAGCGTGTAGACGAATTCTGGC
CATCCATCATTGGCATACCACTAGATCAAAATGGGGATTATGAAGTTCTC
GTTGAAGAAGGTATTTCTGGATATGGTTCCGTAGCAGATGATTTCTTAGG
TGCTAAAAAAAGGTGTGAAGCACGTGGCAAGGAACTTTTGACAATCGAAA
GCGCAGCGAAAATGGAAACTCTTATCGATTTGATCAACAACTTTGTTCAA
ATGATAAGCATATGTGATGCACTATTCAATGGTTTTGTCAGCCAACAAGG
AATTGGAGCTGATCAACATTTCTGTGCAGAAACAATTActCAATTTGGAT
CAACAACGGTTCTTTTCTTGTACGTCTTGATAAAAGCGACAACAATACAC
AAAGCGGCTGAAAAATGTGACCAAAGCCGATGGGTTGAGTTAAATCCAAG
AGCCTTTGCTGTGGAAACCATACAAGAGGCTTTTATTAACCTGCTCAGCA
AAAATGGTTTGCGTGAGGCCGTTGAATTCAGTGCCAATAAAATTTGCTAC
GTCAAGAAAATTGATCAGGATGGACATACAATCGTTGATTGCTCCAAGGA
AGCTCCGAGATACTATTTATGCCGATATGAGCGTGTAGACGAATTCTGGC
CATCCATCATTGGCATACCACTAGATCAAAATGGGGATTATGAAGTTCTC
GTTGAAGAAGGTATTTCTGGATATGGTTCCGTAGCAGATGATTTCTTAGG
TGCTAAAAAAAGGTGTGAAGCACGTGGCAAGGAACTTTTGACAATCGAAA
GCGCAGCGAAAATGGAAACTCTTATCGATTTGATCAACAACTTTGTTCAA
ATGATAAGCATATGTGATGCACTATTCAATGGTTTTGTCAGCCAACAAGG
AATTGGAGCTGATCAACATTTCTGTGCAGAAACAATTActCAATTTGGAT
CAACAACGGTTCTTTTCTTGTACGTCTTGATAAAAGCGACAACAATACAC
AAAGCGGCTGAAAAATGTGACCAAAGCCGATGGGTTGAGTTAAATCCAAG
AGCCTTTGCTGTGGAAACCATACAAGAGGCTTTTATTAACCTGCTCAGCA
AAAATGGTTTGCGTGAGGCCGTTGAATTCAGTGCCAATAAAATTTGCTAC
GTCAAGAAAATTGATCAGGATGGACATACAATCGTTGATTGCTCCAAGGA
AGCTCCGAGATACTATTTATGCCGATATGAGCGTGTAGACGAATTCTGGC
CATCCATCATTGGCATACCACTAGATCAAAATGGGGATTATGAAGTTCTC
GTTGAAGAAGGTATTTCTGGATATGGTTCCGTAGCAGATGATTTCTTAGG
TGCTAAAAAAAGGTGTGAAGCACGTGGCAAGGAACTTTTGACAATCGAAA
GCGCAGCGAAAATGGAAACTCTTATCGATTTGATCAACAACTTTGTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026410XLOC_026410Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042594-proteinTCONS_00042594-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042594-exon-sc0003517-1491911889:5788..5940TCONS_00042594-exon-sc0003517-1491911889:5788..5940Clytia hemisphaericaexon
TCONS_00042594-exon-sc0003517-1510915933:5788..5940TCONS_00042594-exon-sc0003517-1510915933:5788..5940Clytia hemisphaericaexon
TCONS_00042594-exon-sc0003517-1575043694:5788..5940TCONS_00042594-exon-sc0003517-1575043694:5788..5940Clytia hemisphaericaexon
TCONS_00042594-exon-sc0003517-1491911889:9882..10044TCONS_00042594-exon-sc0003517-1491911889:9882..10044Clytia hemisphaericaexon
TCONS_00042594-exon-sc0003517-1510915933:9882..10044TCONS_00042594-exon-sc0003517-1510915933:9882..10044Clytia hemisphaericaexon
TCONS_00042594-exon-sc0003517-1575043694:9882..10044TCONS_00042594-exon-sc0003517-1575043694:9882..10044Clytia hemisphaericaexon
TCONS_00042594-exon-sc0003517-1491911889:10522..10872TCONS_00042594-exon-sc0003517-1491911889:10522..10872Clytia hemisphaericaexon
TCONS_00042594-exon-sc0003517-1510915933:10522..10872TCONS_00042594-exon-sc0003517-1510915933:10522..10872Clytia hemisphaericaexon
TCONS_00042594-exon-sc0003517-1575043694:10522..10872TCONS_00042594-exon-sc0003517-1575043694:10522..10872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003517supercontigsc0003517:5788..10872 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.731711	0.327525	0.281004	0.497499	1.18732	1.56615	0.789677	0.579744	3.62703	3.78779	1.35153	6.12154	0.290296	1.68033	3.21963	1.26123	0.0641074	0.799407	0.224913	0.223969	0	0	0.796498	0.928542	0.276535	0.187102	0.261897	0.163496	0.48225	0.222418
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016186C-type_lectin-like/link
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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