TCONS_00042589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042589
Unique NameTCONS_00042589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042589 ID=TCONS_00042589|Name=TCONS_00042589|organism=Clytia hemisphaerica|type=transcript|length=616bp
GGTAACTCTTCCACTGCTTCCCCGAAGAATTGCCGGAGTTATGTTCAAGG
ATGTTTGTTGTTTCAGTTCCTCTGATGGTTCGAAGAGATAATCGTCTCCA
GATGAAAAATCATATTCGAATTGCCAAATCGTCTCGCAGAGTGGTAAAAT
GTTCTTCTTCCTTCTTGAAAATAGTTCAGTTGTGGGCTTGCGTTTAGACA
TTGAACGTAAAGGTATCGCCTTGAGGTGTTCTTTTGGTACCGGAAGTGAT
GGTTTATCAATTTCGAGAGTTAAACTTTGTTCCTTGTAATTGATCGTTCC
ATTGTTTTCAGTAAGAAAGTTATGTCCCACCACTATGCTGTGGCTCAAGC
CTTCAACGATGTATAAATTGGTCATATACTTTTccttttcgatttccaag
ggtATAAATATGGACCCTTGTATTGCTAGTTCTTCTTGGTTGGCGGTTAC
GACATTAGGAAGATTAGTTGTTGAGGGTGAGATTGTTGTTAAGCTCTTGA
TTTCATCCCAAAAATCTCGACTGATAGCTGTTATGGCAGCTCCACTGTCT
ATCAGAAATTGACAGTCTAATCCAAATATTTTACCCCAAATTCGGACTGA
GGTAGGACTTTCCTGG
Run BLAST on NCBI

protein sequence of TCONS_00042589-protein

>TCONS_00042589-protein ID=TCONS_00042589-protein|Name=TCONS_00042589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
QESPTSVRIWGKIFGLDCQFLIDSGAAITAISRDFWDEIKSLTTISPSTT
NLPNVVTANQEELAIQGSIFIPLEIEKEKYMTNLYIVEGLSHSIVVGHNF
LTENNGTINYKEQSLTLEIDKPSLPVPKEHLKAIPLRSMSKRKPTTELFS
RRKKNILPLCETIWQFEYDFSSGDDYLFEPSEELKQQTSLNITPAILRGS
SGRVT
Run BLAST on NCBI

transcript from alignment at sc0003513:4409..5024

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042589 ID=TCONS_00042589|Name=TCONS_00042589|organism=Clytia hemisphaerica|type=transcript|length=616bp|location=Sequence derived from alignment at sc0003513:4409..5024 (Clytia hemisphaerica)
CCAGGAAAGTCCTACCTCAGTCCGAATTTGGGGTAAAATATTTGGATTAG
ACTGTCAATTTCTGATAGACAGTGGAGCTGCCATAACAGCTATCAGTCGA
GATTTTTGGGATGAAATCAAGAGCTTAACAACAATCTCACCCTCAACAAC
TAATCTTCCTAATGTCGTAACCGCCAACCAAGAAGAACTAGCAATACAAG
GGTCCATATTTATacccttggaaatcgaaaaggAAAAGTATATGACCAAT
TTATACATCGTTGAAGGCTTGAGCCACAGCATAGTGGTGGGACATAACTT
TCTTACTGAAAACAATGGAACGATCAATTACAAGGAACAAAGTTTAACTC
TCGAAATTGATAAACCATCACTTCCGGTACCAAAAGAACACCTCAAGGCG
ATACCTTTACGTTCAATGTCTAAACGCAAGCCCACAACTGAACTATTTTC
AAGAAGGAAGAAGAACATTTTACCACTCTGCGAGACGATTTGGCAATTCG
AATATGATTTTTCATCTGGAGACGATTATCTCTTCGAACCATCAGAGGAA
CTGAAACAACAAACATCCTTGAACATAACTCCGGCAATTCTTCGGGGAAG
CAGTGGAAGAGTTACC

Coding sequence (CDS) from alignment at sc0003513:4409..5024

>TCONS_00042589 ID=TCONS_00042589|Name=TCONS_00042589|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at sc0003513:4409..5024 (Clytia hemisphaerica)
CAGGAAAGTCCTACCTCAGTCCGAATTTGGGGTAAAATATTTGGATTAGA
CTGTCAATTTCTGATAGACAGTGGAGCTGCCATAACAGCTATCAGTCGAG
ATTTTTGGGATGAAATCAAGAGCTTAACAACAATCTCACCCTCAACAACT
AATCTTCCTAATGTCGTAACCGCCAACCAAGAAGAACTAGCAATACAAGG
GTCCATATTTATacccttggaaatcgaaaaggAAAAGTATATGACCAATT
TATACATCGTTGAAGGCTTGAGCCACAGCATAGTGGTGGGACATAACTTT
CTTACTGAAAACAATGGAACGATCAATTACAAGGAACAAAGTTTAACTCT
CGAAATTGATAAACCATCACTTCCGGTACCAAAAGAACACCTCAAGGCGA
TACCTTTACGTTCAATGTCTAAACGCAAGCCCACAACTGAACTATTTTCA
AGAAGGAAGAAGAACATTTTACCACTCTGCGAGACGATTTGGCAATTCGA
ATATGATTTTTCATCTGGAGACGATTATCTCTTCGAACCATCAGAGGAAC
TGAAACAACAAACATCCTTGAACATAACTCCGGCAATTCTTCGGGGAAGC
AGTGGAAGAGTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026405XLOC_026405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042589-exon-sc0003513-1491911889:4409..5024TCONS_00042589-exon-sc0003513-1491911889:4409..5024Clytia hemisphaericaexon
TCONS_00042589-exon-sc0003513-1510915933:4409..5024TCONS_00042589-exon-sc0003513-1510915933:4409..5024Clytia hemisphaericaexon
TCONS_00042589-exon-sc0003513-1575043694:4409..5024TCONS_00042589-exon-sc0003513-1575043694:4409..5024Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042589-proteinTCONS_00042589-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003513supercontigsc0003513:4409..5024 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0850034	0.296091	0.289679	0.352656	0.650239	0.448278	0.314754	0.146911	0.0909866	0	0	2.6088	2.40823	0.296984	0.531183	0	0.469498	2.59455	3.78162	0.421399	0.493305	0	0.363462	0.748715	0.250579	0.239052	0.255122	0.0967507	0.197147
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
IPR001969Aspartic_peptidase_AS
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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