TCONS_00042584 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042584
Unique NameTCONS_00042584
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042584 ID=TCONS_00042584|Name=TCONS_00042584|organism=Clytia hemisphaerica|type=transcript|length=357bp
GCTGcgatatacagttgacgctttctaattcgatttgcaagcgaaataaa
ttttcatcaTAAGGTTAGCGAATCGAATAGTAAACCGTGCTtacaatatt
atcgaataatggagcataAGGAATCATAAGAAGAACGTCTCAAATGGCTA
GCGTCAATAGTAGATTACTTACAGATCTGATTCATTCAAAACCTGATAAT
TACGCTTATTCATCTTCAGTTCGATCGGTTTCGCTTCAATCAGCGTGTGT
TTTCGAAGCACCAAAAGTACAAGTGCACCCACCACAACAACGATAGTCAC
AATACATTGTACATAAAGATAATCGACAATGAAACCAGTAACCAGGCTGG
ATGATAT
Run BLAST on NCBI

transcript from alignment at sc0003512:18..374

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042584 ID=TCONS_00042584|Name=TCONS_00042584|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at sc0003512:18..374 (Clytia hemisphaerica)
ATATCATCCAGCCTGGTTACTGGTTTCATTGTCGATTATCTTTATGTACA
ATGTATTGTGACTATCGTTGTTGTGGTGGGTGCACTTGTACTTTTGGTGC
TTCGAAAACACACGCTGATTGAAGCGAAACCGATCGAACTGAAGATGAAT
AAGCGTAATTATCAGGTTTTGAATGAATCAGATCTGTAAGTAATCTACTA
TTGACGCTAGCCATTTGAGACGTTCTTCTTATGATTCCTtatgctccatt
attcgataatattgtaAGCACGGTTTACTATTCGATTCGCTAACCTTAtg
atgaaaatttatttcgcttgcaaatcgaattagaaagcgtcaactgtata
tcgCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026401XLOC_026401Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042584-exon-sc0003512-1491911889:18..374TCONS_00042584-exon-sc0003512-1491911889:18..374Clytia hemisphaericaexon
TCONS_00042584-exon-sc0003512-1510915933:18..374TCONS_00042584-exon-sc0003512-1510915933:18..374Clytia hemisphaericaexon
TCONS_00042584-exon-sc0003512-1575043694:18..374TCONS_00042584-exon-sc0003512-1575043694:18..374Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003512supercontigsc0003512:18..374 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.233759	0	0	0	0.255451	0.308191	0	0	0	0.242863	0.798242	0	0	0.408353	0.438226	0.500804	0.184446	0.509643	0	0.562581	1.01744	0.824555	0.74964	0.257371	0	0	0.350793	0.266064	0.813232
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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