TCONS_00042579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042579
Unique NameTCONS_00042579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042579 ID=TCONS_00042579|Name=TCONS_00042579|organism=Clytia hemisphaerica|type=transcript|length=390bp
NNGAATGGAAGAAACCTTGAAATTGTGGATCACCAGAAGGTTTTGGGAAC
CACCATTGATGATTCCTTATCCTGGAGAGTACAAattgataaaaacgaaa
agCACTATtgcacaaaaatcaaaatgttgaaaCGTATGGTTATTCTTGGT
AATGTTGTCATGTCAAAATTTTACTTTGTAACGATCCGTTATCCTTTCCC
ATCCGTTACTTATAATATAACAGTATGGGGCAACAATAATGTTATCTTGA
AAAAGCTAGAAATTCTGCACGTGCGAGCTGCTAGACGAATATTCCAACCA
CCAGACCATTTGTCTGACGATGAGGTACTAAAGGCAGCTGGATGGATGAG
TATTGAATATTTGTATAAACGAAGACTGTTATGTCTTATG
Run BLAST on NCBI

protein sequence of TCONS_00042579-protein

>TCONS_00042579-protein ID=TCONS_00042579-protein|Name=TCONS_00042579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
XNGRNLEIVDHQKVLGTTIDDSLSWRVQIDKNEKHYCTKIKMLKRMVILG
NVVMSKFYFVTIRYPFPSVTYNITVWGNNNVILKKLEILHVRAARRIFQP
PDHLSDDEVLKAAGWMSIEYLYKRRLLCLM
Run BLAST on NCBI

transcript from alignment at sc0003506:1286..1675

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042579 ID=TCONS_00042579|Name=TCONS_00042579|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at sc0003506:1286..1675 (Clytia hemisphaerica)
CATAAGACATAACAGTCTTCGTTTATACAAATATTCAATACTCATCCATC
CAGCTGCCTTTAGTACCTCATCGTCAGACAAATGGTCTGGTGGTTGGAAT
ATTCGTCTAGCAGCTCGCACGTGCAGAATTTCTAGCTTTTTCAAGATAAC
ATTATTGTTGCCCCATACTGTTATATTATAAGTAACGGATGGGAAAGGAT
AACGGATCGTTACAAAGTAAAATTTTGACATGACAACATTACCAAGAATA
ACCATACGtttcaacattttgatttttgtgcaATAGTGcttttcgttttt
atcaatTTGTACTCTCCAGGATAAGGAATCATCAATGGTGGTTCCCAAAA
CCTTCTGGTGATCCACAATTTCAAGGTTTCTTCCATTCNN

Coding sequence (CDS) from alignment at sc0003506:1286..1675

>TCONS_00042579 ID=TCONS_00042579|Name=TCONS_00042579|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at sc0003506:1286..1675 (Clytia hemisphaerica)
CATAAGACATAACAGTCTTCGTTTATACAAATATTCAATACTCATCCATC
CAGCTGCCTTTAGTACCTCATCGTCAGACAAATGGTCTGGTGGTTGGAAT
ATTCGTCTAGCAGCTCGCACGTGCAGAATTTCTAGCTTTTTCAAGATAAC
ATTATTGTTGCCCCATACTGTTATATTATAAGTAACGGATGGGAAAGGAT
AACGGATCGTTACAAAGTAAAATTTTGACATGACAACATTACCAAGAATA
ACCATACGtttcaacattttgatttttgtgcaATAGTGcttttcgttttt
atcaatTTGTACTCTCCAGGATAAGGAATCATCAATGGTGGTTCCCAAAA
CCTTCTGGTGATCCACAATTTCAAGGTTTCTTCCATTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026396XLOC_026396Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042579-exon-sc0003506-1491911889:1286..1675TCONS_00042579-exon-sc0003506-1491911889:1286..1675Clytia hemisphaericaexon
TCONS_00042579-exon-sc0003506-1510915933:1286..1675TCONS_00042579-exon-sc0003506-1510915933:1286..1675Clytia hemisphaericaexon
TCONS_00042579-exon-sc0003506-1575043694:1286..1675TCONS_00042579-exon-sc0003506-1575043694:1286..1675Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042579-proteinTCONS_00042579-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003506supercontigsc0003506:1286..1675 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20854	0.960156	0	0.288042	4.21045	0	3.1988	2.15893	1.59305	1.04113	2.07666	1.01463	2.14652	3.53717	2.30945	2.86752	1.43494	2.64394	0.623649	1.65999	1.6282	0.515335	0	1.18364	0.544632	2.50414	1.69269	5.26279	4.47777	2.33546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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