TCONS_00042577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042577
Unique NameTCONS_00042577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042577 ID=TCONS_00042577|Name=TCONS_00042577|organism=Clytia hemisphaerica|type=transcript|length=293bp
AAGAACTTGCTGTAGCTGCTGCTGGAACAATCATGACTGGCTTTATCCCA
TCAACTTTGCACTTGGCTTTACTACAAGCTGACTTCAAAATGTCCTGACA
CACTGGACATTGCTTGAGCCCGAATGCTTCGCATTTTGGTTTTTCACAAA
TAATTTCTCTTTGCACTTGAGAAATGCATGTTTTGCATCTTCCTTTTTTT
TGGCAGTGGCTTCCTTACTTTTGACTTGCTCTTGTTTCTTACTCTCGATG
TCTTTCAGTACAGTGAGCACATTTTTGGCCTTCATTGATCCAT
Run BLAST on NCBI

transcript from alignment at sc0003504:3228..3520

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042577 ID=TCONS_00042577|Name=TCONS_00042577|organism=Clytia hemisphaerica|type=transcript|length=293bp|location=Sequence derived from alignment at sc0003504:3228..3520 (Clytia hemisphaerica)
ATGGATCAATGAAGGCCAAAAATGTGCTCACTGTACTGAAAGACATCGAG
AGTAAGAAACAAGAGCAAGTCAAAAGTAAGGAAGCCACTGCCAAAAAAAA
GGAAGATGCAAAACATGCATTTCTCAAGTGCAAAGAGAAATTATTTGTGA
AAAACCAAAATGCGAAGCATTCGGGCTCAAGCAATGTCCAGTGTGTCAGG
ACATTTTGAAGTCAGCTTGTAGTAAAGCCAAGTGCAAAGTTGATGGGATA
AAGCCAGTCATGATTGTTCCAGCAGCAGCTACAGCAAGTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026394XLOC_026394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042577-exon-sc0003504-1491911889:3228..3520TCONS_00042577-exon-sc0003504-1491911889:3228..3520Clytia hemisphaericaexon
TCONS_00042577-exon-sc0003504-1510915933:3228..3520TCONS_00042577-exon-sc0003504-1510915933:3228..3520Clytia hemisphaericaexon
TCONS_00042577-exon-sc0003504-1575043694:3228..3520TCONS_00042577-exon-sc0003504-1575043694:3228..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003504supercontigsc0003504:3228..3520 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.84888	3.63374	6.09584	0	9.60944	5.54553	3.33591	3.90479	6.71049	2.4865	6.37646	2.17265	3.42816	1.91616	3.11083	7.52662	8.84749	3.84396	0	4.41898	3.59417	1.57176	5.66844	4.52137	0.452121	1.58931	5.7113	3.35343	4.85572	2.77733
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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