TCONS_00042575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042575
Unique NameTCONS_00042575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042575 ID=TCONS_00042575|Name=TCONS_00042575|organism=Clytia hemisphaerica|type=transcript|length=587bp
aaattgatctcgctaaaatttctacgattaaagtaatttTCATTTCAAGC
TTCAATCTTAAAGCATCATCAATGGGGTTTGTGTAACTCACAAATAGCAG
CCATACCTGTAACATTTCACGATTTGACTTCTATCATTAGTCAGCGAacc
attaattttttggatTGGTGTATAAATGATAATTTGCTGATTAATTCTTT
CGAATAGTTTTTTGTATTCTTCAAAAATGGACATGGTGGTCGTGATCTTC
TTTCCTTGTCCAAGTGAAGTTTGATGATGATGCTTTTCTCTCCCATGCTT
TTTCATTTCCAAAATAGTACCCATAACCCATCGCGACAAATGGGGTTTCC
ACGTTTTGACGTCAAAGAATCGAACGTcagaaaagacgggggtaaacgtt
cgaaaatatgtcaaaaagaagacaagaaaaataatttgtgaTTTTTCCCA
AGTAACCACgcttatttattcattttttatacTTCTTTGATGAAagaagt
atatatttttgaaaagtacaTTACTTCGTCAAtcatttattctttttttg
agCTCCTTACTCCAAGGATTTCTCATTTTGTCAGCCG
Run BLAST on NCBI

transcript from alignment at sc0003503:4194..4780

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042575 ID=TCONS_00042575|Name=TCONS_00042575|organism=Clytia hemisphaerica|type=transcript|length=587bp|location=Sequence derived from alignment at sc0003503:4194..4780 (Clytia hemisphaerica)
CGGCTGACAAAATGAGAAATCCTTGGAGTAAGGAGctcaaaaaaagaata
aatgaTTGACGAAGTAAtgtacttttcaaaaatatatacttctTTCATCA
AAGAAgtataaaaaatgaataaataagcGTGGTTACTTGGGAAAAAtcac
aaattatttttcttgtcttctttttgacatattttcgaacgtttaccccc
gtcttttctgACGTTCGATTCTTTGACGTCAAAACGTGGAAACCCCATTT
GTCGCGATGGGTTATGGGTACTATTTTGGAAATGAAAAAGCATGGGAGAG
AAAAGCATCATCATCAAACTTCACTTGGACAAGGAAAGAAGATCACGACC
ACCATGTCCATTTTTGAAGAATACAAAAAACTATTCGAAAGAATTAATCA
GCAAATTATCATTTATACACCAatccaaaaaattaatggtTCGCTGACTA
ATGATAGAAGTCAAATCGTGAAATGTTACAGGTATGGCTGCTATTTGTGA
GTTACACAAACCCCATTGATGATGCTTTAAGATTGAAGCTTGAAATGAaa
attactttaatcgtagaaattttagcgagatcaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026392XLOC_026392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042575-exon-sc0003503-1491911889:4194..4780TCONS_00042575-exon-sc0003503-1491911889:4194..4780Clytia hemisphaericaexon
TCONS_00042575-exon-sc0003503-1510915933:4194..4780TCONS_00042575-exon-sc0003503-1510915933:4194..4780Clytia hemisphaericaexon
TCONS_00042575-exon-sc0003503-1575043694:4194..4780TCONS_00042575-exon-sc0003503-1575043694:4194..4780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003503supercontigsc0003503:4194..4780 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.187713	0	0.850153	1.24761	1.13914	1.40025	1.32734	1.80748	0.079091	0.685769	0.760713	0.375047	0.249684	0.0648248	0.10659	0.228774	0.140915	0.0722169	0	0.208807	0.0907458	0	0.107614	0	0.906926	0.80941	0.128696	0	0	0.212272
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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