TCONS_00042567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042567
Unique NameTCONS_00042567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042567 ID=TCONS_00042567|Name=TCONS_00042567|organism=Clytia hemisphaerica|type=transcript|length=468bp
TATGTAGAAAAAATACAATCTGTGTCCTACTGTGAAGGGACAAAAATACA
ATACAGTGAAATAAATAGCATCACAAAGTGCCCaagaaaattcaagaaaa
ttcgaaaaaattccaacgaaataataaaaaataaagaacttacaattaca
aaaaataaaaaaatacaatataatTTTCTCAATAATTCAAATTACAATTT
TATTTCAGGTATTTATCTGCACTGGTCGAGTATAGATTTGTGATCAAGTC
CCGGCAttcaaaatgctattttttcgTCCTCAATACCAGGGGAGGACTGT
AATGAGCGAACAATAGGGGTCCCTTTTCTGAGCTTCAAAGGNATTTTTTC
GTCCTCAATACCAGGGGAGGACTGTAATGAGCGAACAATAGGGGTCCCTT
TTCTGAACTTCAAAGGAAtacaaaaaccttaaaaaatgaaattgtgacGG
AGAACAATGTAAGAAATA
Run BLAST on NCBI

transcript from alignment at sc0003495:10754..11221

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042567 ID=TCONS_00042567|Name=TCONS_00042567|organism=Clytia hemisphaerica|type=transcript|length=468bp|location=Sequence derived from alignment at sc0003495:10754..11221 (Clytia hemisphaerica)
TATTTCTTACATTGTTCTCCgtcacaatttcattttttaaggtttttgta
TTCCTTTGAAGTTCAGAAAAGGGACCCCTATTGTTCGCTCATTACAGTCC
TCCCCTGGTATTGAGGACGAAAAAATNCCTTTGAAGCTCAGAAAAGGGAC
CCCTATTGTTCGCTCATTACAGTCCTCCCCTGGTATTGAGGAcgaaaaaa
tagcattttgaaTGCCGGGACTTGATCACAAATCTATACTCGACCAGTGC
AGATAAATACCTGAAATAAAATTGTAATTTGAATTATTGAGAAAattata
ttgtatttttttattttttgtaattgtaagttctttattttttattattt
cgttggaattttttcgaattttcttgaattttcttGGGCACTTTGTGATG
CTATTTATTTCACTGTATTGTATTTTTGTCCCTTCACAGTAGGACACAGA
TTGTATTTTTTCTACATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026385XLOC_026385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042567-exon-sc0003495-1491911889:10754..11221TCONS_00042567-exon-sc0003495-1491911889:10754..11221Clytia hemisphaericaexon
TCONS_00042567-exon-sc0003495-1510915933:10754..11221TCONS_00042567-exon-sc0003495-1510915933:10754..11221Clytia hemisphaericaexon
TCONS_00042567-exon-sc0003495-1575043694:10754..11221TCONS_00042567-exon-sc0003495-1575043694:10754..11221Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003495supercontigsc0003495:10754..11221 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.947351	0.386409	0.620382	0.303473	1.03743	0.539514	0.528327	0.571715	0.692581	0.714894	1.24901	0.248885	1.04714	0.189218	0.597296	0.417358	0.459306	0.913889	0.58245	0	0.993196	2.32558	0.971821	2.40191	6.57465	2.73621	2.21826	0.507613	1.03033	0.154901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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