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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042566 ID=TCONS_00042566|Name=TCONS_00042566|organism=Clytia hemisphaerica|type=transcript|length=2460bp
TCTGGCTTATGCGACtgggaaaaaaacttttaagaaaaaCGATTTTAAGC
ATATCATTCGCAGTTAAAATGcacacctttgtgcaaaaaatcgggctccg
tcactttttcaGTAACGAtgcaaaatgagaaaaaactaaTGGACTGAAAA
CTAATGAGCTGATCTCgagagaaaagcttgtaacagatgAACAGACGGAC
AACGGtgaaattaaaggacctccaggtaggtccaaaaagtatgTTCTCGA
TATTAGACTTAGTCCGTCTTATAGTCACTGGGtaattcaaaaattaatat
ttgCGCATTCCCCTTTTTCGCAAAATTCAGTCCTCGTGAAAAACCCGAAG
GATAAAAGATAGAACATTAAGTGAACAAGAGGCTGATTCGCAAAACTTTC
ATTAACGAGAAAactttagatttctcaattacGAAAAAAAAGTTCGCGCT
AAAATTAATGCACTTTTTTTCACAAATAACCATCTTAACCATCTGTACCT
TGGAAAACATTGGAACGCGCAAACCTAACTAGTCTAAACTACGCTTGAGG
CTCTCTACACTTCTCTAAAGAACTGAAAGAATAGTTTCCCACTATCAAGT
TTTATCCTTGTTTTGCAGAGTCATcatgttttatgatttttatgaataac
tttgcgccaatttcaaaaagaacgacaaaaaagaacgacaaatataTCGG
CTCCAAAGGAGTCTAAGGTGTTTACACCTTTGTTGAttcatgttttgttt
tcttctcctgtcagtctacctggagtttgttCTAATATTGTACAGGCCGC
TGGGGTaatgtcgcctgactgtcttaaatgatagtcagcctgtcccaagc
caggataaagacagagggactcagagaggactaattaccctttcattgta
acatcgtctctctaagaggaaaaagaattcggccactctttgttgtttgt
agttctgacaggagaaaacattttattttttcatactatatatatatatt
tttgaactttggttCACATAAAGCGCCATAGCCTTATATCGCAAACCCAA
TAACCCTCAGAGCCTTCATTCATGGTACCCTGTATGTATTATTTATACCA
GGTCTTTAACATTCTCATTACATGACGTTACAATCCGATCGAGATTTATC
GATTCGCAAATGCAATCGACGAAATTCATACAACTTTTGATCACTACTTA
ACGACAACACAACATCATTGTTCATATCTTTCATCTCCAAAATCTGACTC
TTCTTCAATTTGTGCGTCTTCAAGATTTCCTTAATTAAGGTTTTGACATT
CTTACATGCCAGATCACTTTCAATGATTTCGTAAAATACAGTTATCTCTT
CAGTATTCACGAATGTGAGCTGTATCATGACACGCTGCTTCATCAAGATT
TTATCACCATCTAAAAGATTATACTCTGCCAAAGTGTGGCCGTCTTCCAA
CTGTCGGTTATCTTTGGAGCTCCACAAATCAATAAAACAATAATTCTCCT
CATTCTTTGCCTGTCCAGTAACCGCCGCCACCCTGTTTTTAAGGACAATG
ACCTCGTCATTATCGCTTACTTTCTGGGTGAACGAAGAGCCAAAAGAAGT
AGCAAGAGCTTCAAAGTTTACTCTAGGTTTTACGATCCATATGTCGAACA
ATTTCTTGTCCATTGCCAAATTGGGTATTATTTGAACCAAGTGTTGTTTT
TTGGTTTTATGATATGACGGAAAGATGATGTCCCCAATAGTGATTTTTAG
CGTCTTTTTGTTGAATGTTTTGTTACTTCTCTTTACTTGTgtattttgtg
tatttttttctAATATGCACTTTttatacaataaaaaatattcttGGATA
TGCTAAGTCAAGCTTACGTCATTGTTTCATATCGGAAACACCTCCAAAAC
GCTGGAATTTGAACCCTGAgtattactaaaaatagcaACACAGGAGTCAA
ATTCCGATTTTTCGAATGTTTCcgatatgaaaaatgacgtaatcttgtcT
TACACATCTCAAGAAAAGGAGAAACTCTACAGTTGCCGTTACTTCTAATA
AACGCCCTCTACTTTTAAATGCCCCCATCTCGAAAAAATAAGTCTCTTTT
GAGAAAAACTGTTCAACGCCCTGTAATTCTATTCTTTTAGTAttcaaact
gattttgaccAATGATTTACCATAGCCCCGATCGGCTAGATCagcggcct
ttatcgaaaagtgaagcaagttttggtaggatttcctaccaaagaaatca
cgttaATAAACATTAatagataattactgtgtcatgaAAATCTACTCTCC
TACGCAAAGTTTGCGCCCCTCTCGGCTACGCTACTGCACCCGGGCATTTA
TTTGAAGTAACACGGTAAACTATAAAGGAGCCATCAAAACTAACTCGTGC
ATAGCACGCCATTTAACTCTTTACATACACACTACAATCAtacattcttt
taaaaatttt Run BLAST on NCBI protein sequence of TCONS_00042566-protein >TCONS_00042566-protein ID=TCONS_00042566-protein|Name=TCONS_00042566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MDKKLFDIWIVKPRVNFEALATSFGSSFTQKVSDNDEVIVLKNRVAAVTG
QAKNEENYCFIDLWSSKDNRQLEDGHTLAEYNLLDGDKILMKQRVMIQLT
FVNTEEITVFYEIIESDLACKNVKTLIKEILKTHKLKKSQILEMKDMNND
VVLSLSSDQKLYEFRRLHLRIDKSRSDCNVM Run BLAST on NCBI transcript from alignment at sc0003495:8192..10651 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042566 ID=TCONS_00042566|Name=TCONS_00042566|organism=Clytia hemisphaerica|type=transcript|length=2460bp|location=Sequence derived from alignment at sc0003495:8192..10651 (Clytia hemisphaerica)
aaaatttttaaaagaatgtaTGATTGTAGTGTGTATGTAAAGAGTTAAAT
GGCGTGCTATGCACGAGTTAGTTTTGATGGCTCCTTTATAGTTTACCGTG
TTACTTCAAATAAATGCCCGGGTGCAGTAGCGTAGCCGAGAGGGGCGCAA
ACTTTGCGTAGGAGAGTAGATTTtcatgacacagtaattatctatTAATG
TTTATtaacgtgatttctttggtaggaaatcctaccaaaacttgcttcac
ttttcgataaaggccgctGATCTAGCCGATCGGGGCTATGGTAAATCATT
ggtcaaaatcagtttgaaTACTAAAAGAATAGAATTACAGGGCGTTGAAC
AGTTTTTCTCAAAAGAGACTTATTTTTTCGAGATGGGGGCATTTAAAAGT
AGAGGGCGTTTATTAGAAGTAACGGCAACTGTAGAGTTTCTCCTTTTCTT
GAGATGTGTAAgacaagattacgtcatttttcatatcgGAAACATTCGAA
AAATCGGAATTTGACTCCTGTGTtgctatttttagtaatacTCAGGGTTC
AAATTCCAGCGTTTTGGAGGTGTTTCCGATATGAAACAATGACGTAAGCT
TGACTTAGCATATCCaagaatattttttattgtataaAAAGTGCATATTa
gaaaaaaatacacaaaatacACAAGTAAAGAGAAGTAACAAAACATTCAA
CAAAAAGACGCTAAAAATCACTATTGGGGACATCATCTTTCCGTCATATC
ATAAAACCAAAAAACAACACTTGGTTCAAATAATACCCAATTTGGCAATG
GACAAGAAATTGTTCGACATATGGATCGTAAAACCTAGAGTAAACTTTGA
AGCTCTTGCTACTTCTTTTGGCTCTTCGTTCACCCAGAAAGTAAGCGATA
ATGACGAGGTCATTGTCCTTAAAAACAGGGTGGCGGCGGTTACTGGACAG
GCAAAGAATGAGGAGAATTATTGTTTTATTGATTTGTGGAGCTCCAAAGA
TAACCGACAGTTGGAAGACGGCCACACTTTGGCAGAGTATAATCTTTTAG
ATGGTGATAAAATCTTGATGAAGCAGCGTGTCATGATACAGCTCACATTC
GTGAATACTGAAGAGATAACTGTATTTTACGAAATCATTGAAAGTGATCT
GGCATGTAAGAATGTCAAAACCTTAATTAAGGAAATCTTGAAGACGCACA
AATTGAAGAAGAGTCAGATTTTGGAGATGAAAGATATGAACAATGATGTT
GTGTTGTCGTTAAGTAGTGATCAAAAGTTGTATGAATTTCGTCGATTGCA
TTTGCGAATCGATAAATCTCGATCGGATTGTAACGTCATGTAATGAGAAT
GTTAAAGACCTGGTATAAATAATACATACAGGGTACCATGAATGAAGGCT
CTGAGGGTTATTGGGTTTGCGATATAAGGCTATGGCGCTTTATGTGaacc
aaagttcaaaaatatatatatatagtatgaaaaaataaaatgttttctcc
tgtcagaactacaaacaacaaagagtggccgaattctttttcctcttaga
gagacgatgttacaatgaaagggtaattagtcctctctgagtccctctgt
ctttatcctggcttgggacaggctgactatcatttaagacagtcaggcga
cattACCCCAGCGGCCTGTACAATATTAGaacaaactccaggtagactga
caggagaagaaaacaaaacatgaaTCAACAAAGGTGTAAACACCTTAGAC
TCCTTTGGAGCCGAtatatttgtcgttcttttttgtcgttctttttgaaa
ttggcgcaaagttattcataaaaatcataaaacatgATGACTCTGCAAAA
CAAGGATAAAACTTGATAGTGGGAAACTATTCTTTCAGTTCTTTAGAGAA
GTGTAGAGAGCCTCAAGCGTAGTTTAGACTAGTTAGGTTTGCGCGTTCCA
ATGTTTTCCAAGGTACAGATGGTTAAGATGGTTATTTGTGAAAAAAAGTG
CATTAATTTTAGCGCGAACTTTTTTTTCgtaattgagaaatctaaagtTT
TCTCGTTAATGAAAGTTTTGCGAATCAGCCTCTTGTTCACTTAATGTTCT
ATCTTTTATCCTTCGGGTTTTTCACGAGGACTGAATTTTGCGAAAAAGGG
GAATGCGcaaatattaatttttgaattaCCCAGTGACTATAAGACGGACT
AAGTCTAATATCGAGAAcatactttttggacctacctggaggtcctttaa
tttcaCCGTTGTCCGTCTGTTcatctgttacaagcttttctctcGAGATC
AGCTCATTAGTTTTCAGTCCAttagttttttctcattttgcaTCGTTACt
gaaaaagtgacggagcccgattttttgcacaaaggtgtgCATTTTAACTG
CGAATGATATGCTTAAAATCGtttttcttaaaagtttttttcccaGTCGC
ATAAGCCAGA Coding sequence (CDS) from alignment at sc0003495:8192..10651 >TCONS_00042566 ID=TCONS_00042566|Name=TCONS_00042566|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0003495:8192..10651 (Clytia hemisphaerica)
ATGGACAAGAAATTGTTCGACATATGGATCGTAAAACCTAGAGTAAACTT
TGAAGCTCTTGCTACTTCTTTTGGCTCTTCGTTCACCCAGAAAGTAAGCG
ATAATGACGAGGTCATTGTCCTTAAAAACAGGGTGGCGGCGGTTACTGGA
CAGGCAAAGAATGAGGAGAATTATTGTTTTATTGATTTGTGGAGCTCCAA
AGATAACCGACAGTTGGAAGACGGCCACACTTTGGCAGAGTATAATCTTT
TAGATGGTGATAAAATCTTGATGAAGCAGCGTGTCATGATACAGCTCACA
TTCGTGAATACTGAAGAGATAACTGTATTTTACGAAATCATTGAAAGTGA
TCTGGCATGTAAGAATGTCAAAACCTTAATTAAGGAAATCTTGAAGACGC
ACAAATTGAAGAAGAGTCAGATTTTGGAGATGAAAGATATGAACAATGAT
GTTGTGTTGTCGTTAAGTAGTGATCAAAAGTTGTATGAATTTCGTCGATT
GCATTTGCGAATCGATAAATCTCGATCGGATTGTAACGTCATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042566-exon-sc0003495-1491911889:8192..10651 | TCONS_00042566-exon-sc0003495-1491911889:8192..10651 | Clytia hemisphaerica | exon |
| TCONS_00042566-exon-sc0003495-1510915933:8192..10651 | TCONS_00042566-exon-sc0003495-1510915933:8192..10651 | Clytia hemisphaerica | exon |
| TCONS_00042566-exon-sc0003495-1575043694:8192..10651 | TCONS_00042566-exon-sc0003495-1575043694:8192..10651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003495 | supercontig | sc0003495:8192..10651 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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