TCONS_00042562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042562
Unique NameTCONS_00042562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042562 ID=TCONS_00042562|Name=TCONS_00042562|organism=Clytia hemisphaerica|type=transcript|length=220bp
AAACGTGTTCAACATGCTGTCAACGAATTTTGGACTCGTTGGCAAAAGga
atttttaacaaaacttcAAGAACGAACGAAATGGACGAGCAAGAGACGAA
GTTTTCAAATTGGTGATATTGTGCTGCTTAAGACGGACGACAAGCGAAAT
CAATGGCCGCTCGGGCGCATAATTGTTGCCAATACGGACGAACACGGTGA
CTGTAGAAAGGTGACAGTTA
Run BLAST on NCBI

transcript from alignment at sc0003494:10906..11125

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042562 ID=TCONS_00042562|Name=TCONS_00042562|organism=Clytia hemisphaerica|type=transcript|length=220bp|location=Sequence derived from alignment at sc0003494:10906..11125 (Clytia hemisphaerica)
TAACTGTCACCTTTCTACAGTCACCGTGTTCGTCCGTATTGGCAACAATT
ATGCGCCCGAGCGGCCATTGATTTCGCTTGTCGTCCGTCTTAAGCAGCAC
AATATCACCAATTTGAAAACTTCGTCTCTTGCTCGTCCATTTCGTTCGTT
CTTgaagttttgttaaaaattcCTTTTGCCAACGAGTCCAAAATTCGTTG
ACAGCATGTTGAACACGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026380XLOC_026380Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042562-exon-sc0003494-1491911889:10906..11125TCONS_00042562-exon-sc0003494-1491911889:10906..11125Clytia hemisphaericaexon
TCONS_00042562-exon-sc0003494-1510915933:10906..11125TCONS_00042562-exon-sc0003494-1510915933:10906..11125Clytia hemisphaericaexon
TCONS_00042562-exon-sc0003494-1575043694:10906..11125TCONS_00042562-exon-sc0003494-1575043694:10906..11125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003494supercontigsc0003494:10906..11125 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.0332	1.8381	9.55158	4.11122	0	2.63669	0	4.01421	0	0	0	0.823921	0.822776	0	0	0	0.832265	0	0	0	1.94725	0	0	1.28959	0.13188	0.249871	0	0	0	1.24936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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