TCONS_00042559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042559
Unique NameTCONS_00042559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042559 ID=TCONS_00042559|Name=TCONS_00042559|organism=Clytia hemisphaerica|type=transcript|length=262bp
GTTTAGAATGAGAGCGCATACGAACTAGGGAAATTATTGATCGAACTTTA
TCAATCTATAGACCATGATATAGAAACTGGTATAGgaaaaattttggaaa
ttatcaAGAAAAGCACAGAGGGCTCACCAAGTCGAGCTGATTTCATCGAG
TCTGCTTTAAGGTATGCGAAAGTCCCTTTCCGTATGATAGCCAAATTTTT
CCCATCGCCTTTCCTATCGCCACTTTTGATCAGCCAGGACGCTGGCTATG
TAAAATAATAAC
Run BLAST on NCBI

transcript from alignment at sc0003491:9849..10642+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042559 ID=TCONS_00042559|Name=TCONS_00042559|organism=Clytia hemisphaerica|type=transcript|length=794bp|location=Sequence derived from alignment at sc0003491:9849..10642+ (Clytia hemisphaerica)
GTTTAGAATGAGAGCGCATACGAACTAGGGAAATTATTGATCGAACTTTA
TCAATCTATAGACCATGATATAGAAACTGGTATAGGTAGGTGTATTATCT
TTGAGATATTGATTAGAGAACAAGAAAAGCAttgattttgaaatcatttg
tAAACCCTcttttcacagacccactaagaccccttcccactggaaaaatt
gttgaagatatactctaatttttgtccccactgaaaataatcagataagc
aaaacCTCACTGCTAAATATTGTGCTATTCTTTCtacccccactgaattt
tctggctcgaaatGAATGGAACTCAAATCCCCATCCATTCAAAACAAGGG
AgtatccccatcgagttttctGTCCGTTTTTTTTTACCCCTACTGGCTGA
AATAAATCCTAACGGGTCCATGAGAAGGGTTGGTTGTCTTTGTTAGGTAA
GACATGTATTGGTTAAAGTATATTTTAGCCTTTCAATTTTTAACTAGTTG
GATGGATATTTAAAGGCGAGTTAAGACTGGAAATATCACAACACTCTCTC
gtcaaaagttttgaatgaaatattttaaatgaaGAATTCATTACTACTCC
ATTGCTTTTATTTACaggaaaaattttggaaattatcaAGAAAAGCACAG
AGGGCTCACCAAGTCGAGCTGATTTCATCGAGTCTGCTTTAAGGTATGCG
AAAGTCCCTTTCCGTATGATAGCCAAATTTTTCCCATCGCCTTTCCTATC
GCCACTTTTGATCAGCCAGGACGCTGGCTATGTAAAATAATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026377XLOC_026377Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042559-exon-sc0003491-1491911889:9849..9933TCONS_00042559-exon-sc0003491-1491911889:9849..9933Clytia hemisphaericaexon
TCONS_00042559-exon-sc0003491-1510915933:9849..9933TCONS_00042559-exon-sc0003491-1510915933:9849..9933Clytia hemisphaericaexon
TCONS_00042559-exon-sc0003491-1575043694:9849..9933TCONS_00042559-exon-sc0003491-1575043694:9849..9933Clytia hemisphaericaexon
TCONS_00042559-exon-sc0003491-1491911889:10466..10642TCONS_00042559-exon-sc0003491-1491911889:10466..10642Clytia hemisphaericaexon
TCONS_00042559-exon-sc0003491-1510915933:10466..10642TCONS_00042559-exon-sc0003491-1510915933:10466..10642Clytia hemisphaericaexon
TCONS_00042559-exon-sc0003491-1575043694:10466..10642TCONS_00042559-exon-sc0003491-1575043694:10466..10642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003491supercontigsc0003491:9849..10642 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.1919	22.2184	28.5647	14.2672	0.859015	0	0	0	19.7675	23.859	8.5192	23.8277	29.609	23.4498	33.2224	31.1173	34.9779	33.2266	15.8494	14.8702	0.00171498	5.25205	0	8.79061	0	0	6.86033	0	11.2425	6.38185
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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