TCONS_00042557 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042557
Unique NameTCONS_00042557
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042557 ID=TCONS_00042557|Name=TCONS_00042557|organism=Clytia hemisphaerica|type=transcript|length=740bp
ttttatttctaTCATCAgggttgaaagaaaagaaaatggacGGATGTATT
GGGGCAATCGATGGGTCACATATACCCATAAAGAAGTCACACGACAGTGG
CAAAAAATACATAAATCGGAAGAAATTTGCATCTTTGATTTTACAAGCTA
TTGTGGATTACCAGGGAAGATTTATCAACTGTTTCACAGGATTTCCAGGT
TGTGTCCACGACGCACGTGTATATGCCAATTTCGCCGATTGGATATGACA
TCGATAAAAGACCCTAGGACATAATGtcagatgatgatttttttattggC
GATGCTGCATACCCACTTGCCGTGAGGATGATAACACCTTTTCGAATTTC
AGACTCAATGACTGCACAGCAAAAGCGATTCAATTTTACCCAGTCATCAG
CTCGATGTGTTGTAGAAAGGGCCTTTGGTATAATGAAATCTCGTTTTCGT
CGACTACAGTTTATTGATTCTGACAATATCAAAAAAATGTGCTATATCAT
AATGGCTGGATGTGTTTTACACAACATGTCTTTTGAATTGAATGAAAAAC
CCAATGATTTAGAAATACCAACAGGTAACGAACTGAAAACTTTGAGTGCT
GATCCAAACGATTGTGACATTTTTGAGTGTGTTAATGATGATTGTATAAC
TGTTTTGGGGGTGTCTAAGGAAGATGCCATTAAACGACGACAAACAATAA
TGAATAAGCTTTGATATTATTTTGAGTAAAATTAGATGAA
Run BLAST on NCBI

protein sequence of TCONS_00042557-protein

>TCONS_00042557-protein ID=TCONS_00042557-protein|Name=TCONS_00042557-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MSDDDFFIGDAAYPLAVRMITPFRISDSMTAQQKRFNFTQSSARCVVERA
FGIMKSRFRRLQFIDSDNIKKMCYIIMAGCVLHNMSFELNEKPNDLEIPT
GNELKTLSADPNDCDIFECVNDDCITVLGVSKEDAIKRRQTIMNKL
Run BLAST on NCBI

transcript from alignment at sc0003490:9711..10666+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042557 ID=TCONS_00042557|Name=TCONS_00042557|organism=Clytia hemisphaerica|type=transcript|length=956bp|location=Sequence derived from alignment at sc0003490:9711..10666+ (Clytia hemisphaerica)
ttttatttctaTCATCAgggttgaaagaaaagaaaatggacGGATGTATT
GGGGCAATCGATGGGTCACATATACCCATAAAGAAGTCACACGACAGTGG
CAAAAAATACATAAATCGGAAGAAATTTGCATCTTTGATTTTACAAGGTA
CACACTTTTTATCATAATAGATACATCAATCTTGCTCATTATACTTCATC
TAAAAGCCAGTTTTTTAATGCCTTTGATTCGGTTTCAATTGTCGATAAAT
CAATCGATAACAATAAAAGGAAAGGGCCCAAGTCCACAATAAAATGAGTG
CAGTTGACATTtgctttggaaaatattttttcttaattatcaattattta
atCTTTCTTAAAGCTATTGTGGATTACCAGGGAAGATTTATCAACTGTTT
CACAGGATTTCCAGGTTGTGTCCACGACGCACGTGTATATGCCAATTTCG
CCGATTGGATATGACATCGATAAAAGACCCTAGGACATAATGtcagatga
tgatttttttattggCGATGCTGCATACCCACTTGCCGTGAGGATGATAA
CACCTTTTCGAATTTCAGACTCAATGACTGCACAGCAAAAGCGATTCAAT
TTTACCCAGTCATCAGCTCGATGTGTTGTAGAAAGGGCCTTTGGTATAAT
GAAATCTCGTTTTCGTCGACTACAGTTTATTGATTCTGACAATATCAAAA
AAATGTGCTATATCATAATGGCTGGATGTGTTTTACACAACATGTCTTTT
GAATTGAATGAAAAACCCAATGATTTAGAAATACCAACAGGTAACGAACT
GAAAACTTTGAGTGCTGATCCAAACGATTGTGACATTTTTGAGTGTGTTA
ATGATGATTGTATAACTGTTTTGGGGGTGTCTAAGGAAGATGCCATTAAA
CGACGACAAACAATAATGAATAAGCTTTGATATTATTTTGAGTAAAATTA
GATGAA

Coding sequence (CDS) from alignment at sc0003490:9711..10666+

>TCONS_00042557 ID=TCONS_00042557|Name=TCONS_00042557|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at sc0003490:9711..10666+ (Clytia hemisphaerica)
ATGtcagatgatgatttttttattggCGATGCTGCATACCCACTTGCCGT
GAGGATGATAACACCTTTTCGAATTTCAGACTCAATGACTGCACAGCAAA
AGCGATTCAATTTTACCCAGTCATCAGCTCGATGTGTTGTAGAAAGGGCC
TTTGGTATAATGAAATCTCGTTTTCGTCGACTACAGTTTATTGATTCTGA
CAATATCAAAAAAATGTGCTATATCATAATGGCTGGATGTGTTTTACACA
ACATGTCTTTTGAATTGAATGAAAAACCCAATGATTTAGAAATACCAACA
GGTAACGAACTGAAAACTTTGAGTGCTGATCCAAACGATTGTGACATTTT
TGAGTGTGTTAATGATGATTGTATAACTGTTTTGGGGGTGTCTAAGGAAG
ATGCCATTAAACGACGACAAACAATAATGAATAAGCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026375XLOC_026375Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042557-proteinTCONS_00042557-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042557-exon-sc0003490-1491911889:9711..9857TCONS_00042557-exon-sc0003490-1491911889:9711..9857Clytia hemisphaericaexon
TCONS_00042557-exon-sc0003490-1510915933:9711..9857TCONS_00042557-exon-sc0003490-1510915933:9711..9857Clytia hemisphaericaexon
TCONS_00042557-exon-sc0003490-1575043694:9711..9857TCONS_00042557-exon-sc0003490-1575043694:9711..9857Clytia hemisphaericaexon
TCONS_00042557-exon-sc0003490-1491911889:10074..10666TCONS_00042557-exon-sc0003490-1491911889:10074..10666Clytia hemisphaericaexon
TCONS_00042557-exon-sc0003490-1510915933:10074..10666TCONS_00042557-exon-sc0003490-1510915933:10074..10666Clytia hemisphaericaexon
TCONS_00042557-exon-sc0003490-1575043694:10074..10666TCONS_00042557-exon-sc0003490-1575043694:10074..10666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003490supercontigsc0003490:9711..10666 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.177334	0.205902	0.0740109	0.454071	0.435835	0.717074	0.76012	1.16865	1.15979	1.557	0.962884	1.34687	0.646233	0.390341	0.718092	0.667154	0.697381	0.775125	1.57615	0.728945	0.473825	0.331492	0.211934	0.418213	1.1955	0.501014	0.41414	0.23587	0.719724
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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