TCONS_00042554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042554
Unique NameTCONS_00042554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042554 ID=TCONS_00042554|Name=TCONS_00042554|organism=Clytia hemisphaerica|type=transcript|length=2375bp
AACGAGAACAGTGGATTAACCCACCATGGCGAAGCCATTGGAGAAGAAGA
GGAATTAACACCAACCCTTGAGAACTTTATTGTTTTACAGTGGCTCCATT
TGCTACACAAGGACTTACCTACTCTCGTCAAACAGAGATATGGTACAGAA
TTACGCTCTCGAACATTAGCTTCCATAAAACCTGAAATATCGCAAGCAAT
GGACTCCCTCCTCGAAAGTATCCAGTCTAATGACGAAGCCAAAGTCTTAC
GTTCAGCTTCATCGTTCCATCGCTCAAAACAACCCTCATCGTCAACACGT
CGACCATCCTCCATCAAAGCATCATGCCCACTATGTTCGTCCATGAACCG
GCCATCCAACCACTTCCTTAGCAAATGTCAGTTCCTCCCAGACCAAGACC
GAAGATTCATGGCCAAAGCCCGCCTTATTGCTGCCCTTGACGAGAATGAC
CAACCTGAAATTGACCTCCAATCTGCTGAGGACCTACCGTCCCAAGTTGC
AGCCATCAGCTTACCATCATCAACAAGACGTGTCCAAATCAAATCCTCTC
CTGTTGTTAACATGACATATAAACAATATGACATTTCTACGACACTGGAC
ACAGGCTCCGAAACTAACATGATCAGTGAATCTACAGCACGCCTCATACA
CGCTCCCATAACTCCAAGTTCGCAGAGCGCTGTCCAAGCGGATGGTCAGT
CCGAACTCTCAGTAATTGGTGAAACTCGAATTAACTTGACATTCCAtaac
aaaacattttctttggaaGCACTAGTTGTTAAAAACCTTGATGGAGATGT
TATTGCAGGTATACCTTTTCTTAGTGAGCACGACATTACGCTCAGACCCT
CAAAGAGACAAGTCAACTTTAGTGATGGGTCAGCCTACGTTTACAACAAC
CTACGTACCTTCAAACACCCTGCTAATGTTAAAAGAACGAGCTCGTACAT
CCTCCGTTCCCCAGCCACCACAGTATGGCCCAACGAGTATTTAGAAATGA
CTGTACCCCCGGAATGGGATGAACAAGACATAGTCCTCGAGCCCCGCTCT
GGCGATAGCAGCAACCGACACCTTTCATGCCCGCCCCCTATGATCACCCG
CCCGAAAGCTGGCAAGATCCGTATACCTAATTCCACGGACCAACCCAAAG
TGCTACGCAAGAACCAGCAGTTTGCTCAGATCATCACAGCATCAGATCCA
TCACCAACTGTTCCATCTTATCTCCCTGACCAATCATTTGAAGCAATCAC
ACCTACACCTCCATTACACACCATCTTACTCGATGAAAGTAACCAACTCC
CGCCCGACGTCCGGTCTGCTTTCAAAGATCTTCATCAAGAATTTTCATCC
GTATTCGATCCCTCGTTTCCAGGATACAACGGAGCCAGTGGACCAATCAA
AGCAATTGTCAATATGGGTCCAGTTGAACCTCCTCAACGTAAAGGGAAGG
TTCCGCAGTATTCAAACGATAAACTTCACGAACTCCAAGCTAAATGTGAC
GAGTTAGAGAGACTCCAGGTCCTTCGTAAACCAGAGGATCTTGGTATAAC
TCCAGAGTATCTTAACCCTTCGTTTCTCGTGAAGAAACCTTCAGGTGGAT
TTCGTCTTGTTACTTCCTTTGGTGAAGTAGCCCAATACTCCAAACCGCAA
CCCGCCCTCATGCCTGACGTTAATGCAACCCTCCAATCAATTGGCCAGTG
GAAGTATATCATCCAAACCGACCTCACCCAAGCATTCTACCAAATTCCGC
TTGCAAGGAAGTCTGTTAAATATTGTGGAATATCAACACCTTTTCGTGGC
GCCCGTGTCTACGCCAGATCTGCGATGGGCATGCCTGGATCGGAAACTGC
ATTAGAAGAGCTTCTGTCCCGCGTCCTCGGTGAACTTATTGAGAACGGCT
ACGTAGCCAAAGTTGCCGACGATCTTTACTGTGGAGGGAATACACCTAGA
GAACTTTTATCGAATTGGCGCAAAGTATTGACAGCACTTAACACTAACAA
ACTAACGTTGTCCGCTCGCAAGACCGTTATTGCTCCCAAGTCCGCCACCA
TTCTCGGTTGGATATGGTCAGAAGGAACCTTGAAAGCCTCATCACATCGT
ATTTCTACTCTCTCCACCTGTGCTCGCCCCGATAAAGTTAAAGGCTTACG
ATCCTATTTGGGTGCCTACAAGTTTCTATCACGTGTCATCCCAAATTGCT
CGACCTACCTCGCACCGTTAGAGTCATTAGTTGCTGGCAAAGCCTCCACC
GACGCTCTTAACTGGACCGATGAGCTCCTTCAAGTTTTTCGTGATTCCCA
GTTACATCTACACAACAACCGTTCAATCACCATCCCTCAACCAGATGACC
AACTGTGGATTGTCACAGATGGCGN
Run BLAST on NCBI

transcript from alignment at sc0003488:5333..7707-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042554 ID=TCONS_00042554|Name=TCONS_00042554|organism=Clytia hemisphaerica|type=transcript|length=2375bp|location=Sequence derived from alignment at sc0003488:5333..7707- (Clytia hemisphaerica)
AACGAGAACAGTGGATTAACCCACCATGGCGAAGCCATTGGAGAAGAAGA
GGAATTAACACCAACCCTTGAGAACTTTATTGTTTTACAGTGGCTCCATT
TGCTACACAAGGACTTACCTACTCTCGTCAAACAGAGATATGGTACAGAA
TTACGCTCTCGAACATTAGCTTCCATAAAACCTGAAATATCGCAAGCAAT
GGACTCCCTCCTCGAAAGTATCCAGTCTAATGACGAAGCCAAAGTCTTAC
GTTCAGCTTCATCGTTCCATCGCTCAAAACAACCCTCATCGTCAACACGT
CGACCATCCTCCATCAAAGCATCATGCCCACTATGTTCGTCCATGAACCG
GCCATCCAACCACTTCCTTAGCAAATGTCAGTTCCTCCCAGACCAAGACC
GAAGATTCATGGCCAAAGCCCGCCTTATTGCTGCCCTTGACGAGAATGAC
CAACCTGAAATTGACCTCCAATCTGCTGAGGACCTACCGTCCCAAGTTGC
AGCCATCAGCTTACCATCATCAACAAGACGTGTCCAAATCAAATCCTCTC
CTGTTGTTAACATGACATATAAACAATATGACATTTCTACGACACTGGAC
ACAGGCTCCGAAACTAACATGATCAGTGAATCTACAGCACGCCTCATACA
CGCTCCCATAACTCCAAGTTCGCAGAGCGCTGTCCAAGCGGATGGTCAGT
CCGAACTCTCAGTAATTGGTGAAACTCGAATTAACTTGACATTCCATAAC
AAAACATTTTCTTTGGAAGCACTAGTTGTTAAAAACCTTGATGGAGATGT
TATTGCAGGTATACCTTTTCTTAGTGAGCACGACATTACGCTCAGACCCT
CAAAGAGACAAGTCAACTTTAGTGATGGGTCAGCCTACGTTTACAACAAC
CTACGTACCTTCAAACACCCTGCTAATGTTAAAAGAACGAGCTCGTACAT
CCTCCGTTCCCCAGCCACCACAGTATGGCCCAACGAGTATTTAGAAATGA
CTGTACCCCCGGAATGGGATGAACAAGACATAGTCCTCGAGCCCCGCTCT
GGCGATAGCAGCAACCGACACCTTTCATGCCCGCCCCCTATGATCACCCG
CCCGAAAGCTGGCAAGATCCGTATACCTAATTCCACGGACCAACCCAAAG
TGCTACGCAAGAACCAGCAGTTTGCTCAGATCATCACAGCATCAGATCCA
TCACCAACTGTTCCATCTTATCTCCCTGACCAATCATTTGAAGCAATCAC
ACCTACACCTCCATTACACACCATCTTACTCGATGAAAGTAACCAACTCC
CGCCCGACGTCCGGTCTGCTTTCAAAGATCTTCATCAAGAATTTTCATCC
GTATTCGATCCCTCGTTTCCAGGATACAACGGAGCCAGTGGACCAATCAA
AGCAATTGTCAATATGGGTCCAGTTGAACCTCCTCAACGTAAAGGGAAGG
TTCCGCAGTATTCAAACGATAAACTTCACGAACTCCAAGCTAAATGTGAC
GAGTTAGAGAGACTCCAGGTCCTTCGTAAACCAGAGGATCTTGGTATAAC
TCCAGAGTATCTTAACCCTTCGTTTCTCGTGAAGAAACCTTCAGGTGGAT
TTCGTCTTGTTACTTCCTTTGGTGAAGTAGCCCAATACTCCAAACCGCAA
CCCGCCCTCATGCCTGACGTTAATGCAACCCTCCAATCAATTGGCCAGTG
GAAGTATATCATCCAAACCGACCTCACCCAAGCATTCTACCAAATTCCGC
TTGCAAGGAAGTCTGTTAAATATTGTGGAATATCAACACCTTTTCGTGGC
GCCCGTGTCTACGCCAGATCTGCGATGGGCATGCCTGGATCGGAAACTGC
ATTAGAAGAGCTTCTGTCCCGCGTCCTCGGTGAACTTATTGAGAACGGCT
ACGTAGCCAAAGTTGCCGACGATCTTTACTGTGGAGGGAATACACCTAGA
GAACTTTTATCGAATTGGCGCAAAGTATTGACAGCACTTAACACTAACAA
ACTAACGTTGTCCGCTCGCAAGACCGTTATTGCTCCCAAGTCCGCCACCA
TTCTCGGTTGGATATGGTCAGAAGGAACCTTGAAAGCCTCATCACATCGT
ATTTCTACTCTCTCCACCTGTGCTCGCCCCGATAAAGTTAAAGGCTTACG
ATCCTATTTGGGTGCCTACAAGTTTCTATCACGTGTCATCCCAAATTGCT
CGACCTACCTCGCACCGTTAGAGTCATTAGTTGCTGGCAAAGCCTCCACC
GACGCTCTTAACTGGACCGATGAGCTCCTTCAAGTTTTTCGTGATTCCCA
GTTACATCTACACAACAACCGTTCAATCACCATCCCTCAACCAGATGACC
AACTGTGGATTGTCACAGATGGCGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026372XLOC_026372Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042554-exon-sc0003488-1575043694:5333..7707TCONS_00042554-exon-sc0003488-1575043694:5333..7707Clytia hemisphaericaexon
TCONS_00042554-exon-sc0003488-1510915933:5333..7707TCONS_00042554-exon-sc0003488-1510915933:5333..7707Clytia hemisphaericaexon
TCONS_00042554-exon-sc0003488-1491911889:5333..7707TCONS_00042554-exon-sc0003488-1491911889:5333..7707Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003488supercontigsc0003488:5333..7707 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.830863	0.402046	0.833305	0.402594	3.28766	2.65405	1.40137	2.26101	0.68373	1.97693	1.05639	0.800517	1.46081	0.904434	0.815402	0.809414	1.02363	0.893974	0.904413	1.12777	1.26855	1.29348	0.296637	0.824392	1.78486	1.89776	1.07216	0.364333	0.874073	0.624505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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