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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042545 ID=TCONS_00042545|Name=TCONS_00042545|organism=Clytia hemisphaerica|type=transcript|length=828bp
TTAGATCTCGACATATCGCCCCGTTAGAGCCTGTGAAAAAGGTAGAAGAA
TTTGGACGAGTTGACTCCATGGATAATTTGAAAGAGTTCGCTTTGTATAG
TTTGATTGGATTGGCTATCATACTGTTTGTTATTGTCTTTGAAAAGGCTG
TAGTTGTATTTGGAAAAAGGATTTCATTGACAAATTTAATGCTACACACC
TACCAGAAAATTAAGATTTCGATACTAGCGATATACGCAACTTTAAAGAT
CTTTATTGATaagcttttggaaaaatatgagGGAAGCATCAACcgtaaaa
ttttctttgcattGAAATTGGTATTGAGGGTGACTGTATTTGTAAGGATT
TTGAAAGGCAAGAGTCAAAATCTCTTAAAGAAAGGAGCATCTGTTTTAAT
GGGTTTTATTACCACTGCCATATGTTATGGAAAAACGATCATCAGACGAG
TTTTCCaaataatttcttcaaaaagaaCCATATTGCTTTGTATTATCGTT
GCTATGGTTGTTATTGCAACTGGATGGTACTTCAATGATGCCAATGAAAT
CTTACAAGACGCCCCAACAATGCCATCAATACCACCTTCATCACCGCCCG
TAACTTCCTCGCCCTCCCCGGAGCAGGAGATACTATTCATGGTTGCATTG
CCGTCGTCTTGTTTATTAATGTTATGGATTTTCACTGTTTACACCGAAAT
TATCATCCCAATGATGACATGTCGCAGATGAATTCTCCAGTTTTATATAT
ATTATATCATAAATAATGTACATTATAATTAGACTTTTTTAATTAGGTTT
TAGATTCATAGCTTTTTTTAGATATCGA Run BLAST on NCBI transcript from alignment at sc0003483:14820..16379+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042545 ID=TCONS_00042545|Name=TCONS_00042545|organism=Clytia hemisphaerica|type=transcript|length=1560bp|location=Sequence derived from alignment at sc0003483:14820..16379+ (Clytia hemisphaerica)
TTAGATCTCGACATATCGCCCCGTTAGAGCCTGTGAAAAAGGTAGAAGAA
TTTGGACGAGTTGACTCCATGGATAATTTGAAAGAGTTCGCTTTGTATAG
TTTGATTGGATTGGCTATCATACTGTTTGTTATTGTCTTTGAAAAGGCTG
TAGTTGTATTTGGAAAAAGGATTTCATTGACAAATTTAATGCTACACACC
TACCAGAAAATTAAGATTTCGATACTAGCGATATACGCAACTTTAAAGAT
CTTTATTGATaagcttttggaaaaatatgagGGAAGCATCAACcgtaaaa
ttttctttgcattGAAATTGGTATTGAGGGTGACTGTATTTGTAAGGATT
TTGAAAGGCAAGAGTCAAAATCTCTTAAAGAAAGGAGCATCTGTTTTAAT
GGGTTTTATTACCACTGCCATATGTTATGGAAAAACGATCATCAGACGAG
TTTTCCaaataatttcttcaaaaagaaCCATATTGCTTTGTATTATCGTT
GCTATGGTTGTTATTGCAACTGGATGGTACTTCAATGATGCCAATGAAAT
GCAAGTGTAAGTATCCTTTTCGTTATTTCGATCCCCGCTTGCTTCTCACA
CTAAATATTTTAAACTCGTACACTATTTAGACTATACTTGATGTCATGGC
TTTTTTTCTATGCAGTAGAAACTGAATGGAAAATACAGGGTTTTGGTGAG
GTACTACACGCACTTTAGGTTTAAGCGATTTCACGAGGGAAAAAAAGAAC
GTAGAAATTTGATAAGTGTATGAAGAAATTCTGTTGGGTAATATGGTTTG
GAATTTCCATCATAATTGTTTTTTCTCTCCTATACTGAACTCTATTTTAA
CAAATGCCACCGTTCTCTGTCATGATTATTCATAGAATGGCAAAATTTTC
TCATTCCCGGCTAAACTTTTCTATTGTTACATTAGAACCGAAAAGGTTTA
ACAATCTGGGAAGGTACCAAAGTAGCTCCAACAGGTAAGGCCATCAGTCA
CAATAAGGTCTTTGTGTGTTGTCTAAGCATTTGTACAGGATTACTTTTGC
CAGTATTTTCAAAAAAAAAGCAGCAAAACGATCCCGCAAATGCACCAGGA
ATTACGGTAATTTGCTGTTCTATGGAAGATTTTTGATGGAAATTTTTGTC
TAGAAAAAAGATTGAGGAAACCCCCTGAAATCAAGGATTCCAATAATATA
GCATATTCTTTATAACGGCTAAGGGGTGTTAGGAAATTGTTCAAATTTAA
AATATTTTTGATAGTTCACATTTTCCTTATAGCTTACAAGACGCCCCAAC
AATGCCATCAATACCACCTTCATCACCGCCCGTAACTTCCTCGCCCTCCC
CGGAGCAGGAGATACTATTCATGGTTGCATTGCCGTCGTCTTGTTTATTA
ATGTTATGGATTTTCACTGTTTACACCGAAATTATCATCCCAATGATGAC
ATGTCGCAGATGAATTCTCCAGTTTTATATATATTATATCATAAATAATG
TACATTATAATTAGACTTTTTTAATTAGGTTTTAGATTCATAGCTTTTTT
TAGATATCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042545-exon-sc0003483-1491911889:14820..15369 | TCONS_00042545-exon-sc0003483-1491911889:14820..15369 | Clytia hemisphaerica | exon |
| TCONS_00042545-exon-sc0003483-1510915933:14820..15369 | TCONS_00042545-exon-sc0003483-1510915933:14820..15369 | Clytia hemisphaerica | exon |
| TCONS_00042545-exon-sc0003483-1575043694:14820..15369 | TCONS_00042545-exon-sc0003483-1575043694:14820..15369 | Clytia hemisphaerica | exon |
| TCONS_00042545-exon-sc0003483-1491911889:16102..16379 | TCONS_00042545-exon-sc0003483-1491911889:16102..16379 | Clytia hemisphaerica | exon |
| TCONS_00042545-exon-sc0003483-1510915933:16102..16379 | TCONS_00042545-exon-sc0003483-1510915933:16102..16379 | Clytia hemisphaerica | exon |
| TCONS_00042545-exon-sc0003483-1575043694:16102..16379 | TCONS_00042545-exon-sc0003483-1575043694:16102..16379 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003483 | supercontig | sc0003483:14820..16379 + |
Blast
The following BLAST results are available for this feature:
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