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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042544 ID=TCONS_00042544|Name=TCONS_00042544|organism=Clytia hemisphaerica|type=transcript|length=834bp
TTAGATCTCGACATATCGCCCCGTTAGAGCCTGTGAAAAAGGTAGAAGAA
TTTGGACGAGTTGACTCCATGGATAATTTGAAAGAGTTCGCTTTGTATAG
TTTGATTGGATTGGCTATCATACTGTTTGTTATTGTCTTTGAAAAGGCTG
TAGTTGTATTTGGAAAAAGGATTTCATTGACAAATTTAATGCTACACACC
TACCAGAAAATTAAGATTTCGATACTAGCGATATACGCAACTTTAAAGAT
CTTTATTGATaagcttttggaaaaatatgagGGAAGCATCAACcgtaaaa
ttttctttgcattGAAATTGGTATTGAGGGTGACTGTATTTGTAAGGATT
TTGAAAGGCAAGAGTCAAAATCTCTTAAAGAAAGGAGCATCTGTTTTAAT
GGGTTTTATTACCACTGCCATATGTTATGGAAAAACGATCATCAGACGAG
TTTTCCaaataatttcttcaaaaagaaCCATATTGCTTTGTATTATCGTT
GCTATGGTTGTTATTGCAACTGGATGGTACTTCAATGATGCCAATGAAAT
GCAAGTCTTACAAGACGCCCCAACAATGCCATCAATACCACCTTCATCAC
CGCCCGTAACTTCCTCGCCCTCCCCGGAGCAGGAGATACTATTCATGGTT
GCATTGCCGTCGTCTTGTTTATTAATGTTATGGATTTTCACTGTTTACAC
CGAAATTATCATCCCAATGATGACATGTCGCAGATGAATTCTCCAGTTTT
ATATATATTATATCATAAATAATGTACATTATAATTAGACTTTTTTAATT
AGGTTTTAGATTCATAGCTTTTTTTAGATATCGA Run BLAST on NCBI protein sequence of TCONS_00042544-protein >TCONS_00042544-protein ID=TCONS_00042544-protein|Name=TCONS_00042544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
RSRHIAPLEPVKKVEEFGRVDSMDNLKEFALYSLIGLAIILFVIVFEKAV
VVFGKRISLTNLMLHTYQKIKISILAIYATLKIFIDKLLEKYEGSINRKI
FFALKLVLRVTVFVRILKGKSQNLLKKGASVLMGFITTAICYGKTIIRRV
FQIISSKRTILLCIIVAMVVIATGWYFNDANEMQVLQDAPTMPSIPPSSP
PVTSSPSPEQEILFMVALPSSCLLMLWIFTVYTEIIIPMMTCRR Run BLAST on NCBI transcript from alignment at sc0003483:14820..16379+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042544 ID=TCONS_00042544|Name=TCONS_00042544|organism=Clytia hemisphaerica|type=transcript|length=1560bp|location=Sequence derived from alignment at sc0003483:14820..16379+ (Clytia hemisphaerica)
TTAGATCTCGACATATCGCCCCGTTAGAGCCTGTGAAAAAGGTAGAAGAA
TTTGGACGAGTTGACTCCATGGATAATTTGAAAGAGTTCGCTTTGTATAG
TTTGATTGGATTGGCTATCATACTGTTTGTTATTGTCTTTGAAAAGGCTG
TAGTTGTATTTGGAAAAAGGATTTCATTGACAAATTTAATGCTACACACC
TACCAGAAAATTAAGATTTCGATACTAGCGATATACGCAACTTTAAAGAT
CTTTATTGATaagcttttggaaaaatatgagGGAAGCATCAACcgtaaaa
ttttctttgcattGAAATTGGTATTGAGGGTGACTGTATTTGTAAGGATT
TTGAAAGGCAAGAGTCAAAATCTCTTAAAGAAAGGAGCATCTGTTTTAAT
GGGTTTTATTACCACTGCCATATGTTATGGAAAAACGATCATCAGACGAG
TTTTCCaaataatttcttcaaaaagaaCCATATTGCTTTGTATTATCGTT
GCTATGGTTGTTATTGCAACTGGATGGTACTTCAATGATGCCAATGAAAT
GCAAGTGTAAGTATCCTTTTCGTTATTTCGATCCCCGCTTGCTTCTCACA
CTAAATATTTTAAACTCGTACACTATTTAGACTATACTTGATGTCATGGC
TTTTTTTCTATGCAGTAGAAACTGAATGGAAAATACAGGGTTTTGGTGAG
GTACTACACGCACTTTAGGTTTAAGCGATTTCACGAGGGAAAAAAAGAAC
GTAGAAATTTGATAAGTGTATGAAGAAATTCTGTTGGGTAATATGGTTTG
GAATTTCCATCATAATTGTTTTTTCTCTCCTATACTGAACTCTATTTTAA
CAAATGCCACCGTTCTCTGTCATGATTATTCATAGAATGGCAAAATTTTC
TCATTCCCGGCTAAACTTTTCTATTGTTACATTAGAACCGAAAAGGTTTA
ACAATCTGGGAAGGTACCAAAGTAGCTCCAACAGGTAAGGCCATCAGTCA
CAATAAGGTCTTTGTGTGTTGTCTAAGCATTTGTACAGGATTACTTTTGC
CAGTATTTTCAAAAAAAAAGCAGCAAAACGATCCCGCAAATGCACCAGGA
ATTACGGTAATTTGCTGTTCTATGGAAGATTTTTGATGGAAATTTTTGTC
TAGAAAAAAGATTGAGGAAACCCCCTGAAATCAAGGATTCCAATAATATA
GCATATTCTTTATAACGGCTAAGGGGTGTTAGGAAATTGTTCAAATTTAA
AATATTTTTGATAGTTCACATTTTCCTTATAGCTTACAAGACGCCCCAAC
AATGCCATCAATACCACCTTCATCACCGCCCGTAACTTCCTCGCCCTCCC
CGGAGCAGGAGATACTATTCATGGTTGCATTGCCGTCGTCTTGTTTATTA
ATGTTATGGATTTTCACTGTTTACACCGAAATTATCATCCCAATGATGAC
ATGTCGCAGATGAATTCTCCAGTTTTATATATATTATATCATAAATAATG
TACATTATAATTAGACTTTTTTAATTAGGTTTTAGATTCATAGCTTTTTT
TAGATATCGA Coding sequence (CDS) from alignment at sc0003483:14820..16379+ >TCONS_00042544 ID=TCONS_00042544|Name=TCONS_00042544|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at sc0003483:14820..16379+ (Clytia hemisphaerica)
AGATCTCGACATATCGCCCCGTTAGAGCCTGTGAAAAAGGTAGAAGAATT
TGGACGAGTTGACTCCATGGATAATTTGAAAGAGTTCGCTTTGTATAGTT
TGATTGGATTGGCTATCATACTGTTTGTTATTGTCTTTGAAAAGGCTGTA
GTTGTATTTGGAAAAAGGATTTCATTGACAAATTTAATGCTACACACCTA
CCAGAAAATTAAGATTTCGATACTAGCGATATACGCAACTTTAAAGATCT
TTATTGATaagcttttggaaaaatatgagGGAAGCATCAACcgtaaaatt
ttctttgcattGAAATTGGTATTGAGGGTGACTGTATTTGTAAGGATTTT
GAAAGGCAAGAGTCAAAATCTCTTAAAGAAAGGAGCATCTGTTTTAATGG
GTTTTATTACCACTGCCATATGTTATGGAAAAACGATCATCAGACGAGTT
TTCCaaataatttcttcaaaaagaaCCATATTGCTTTGTATTATCGTTGC
TATGGTTGTTATTGCAACTGGATGGTACTTCAATGATGCCAATGAAATGC
AAGTCTTACAAGACGCCCCAACAATGCCATCAATACCACCTTCATCACCG
CCCGTAACTTCCTCGCCCTCCCCGGAGCAGGAGATACTATTCATGGTTGC
ATTGCCGTCGTCTTGTTTATTAATGTTATGGATTTTCACTGTTTACACCG
AAATTATCATCCCAATGATGACATGTCGCAGATGAAGATCTCGACATATC
GCCCCGTTAGAGCCTGTGAAAAAGGTAGAAGAATTTGGACGAGTTGACTC
CATGGATAATTTGAAAGAGTTCGCTTTGTATAGTTTGATTGGATTGGCTA
TCATACTGTTTGTTATTGTCTTTGAAAAGGCTGTAGTTGTATTTGGAAAA
AGGATTTCATTGACAAATTTAATGCTACACACCTACCAGAAAATTAAGAT
TTCGATACTAGCGATATACGCAACTTTAAAGATCTTTATTGATaagcttt
tggaaaaatatgagGGAAGCATCAACcgtaaaattttctttgcattGAAA
TTGGTATTGAGGGTGACTGTATTTGTAAGGATTTTGAAAGGCAAGAGTCA
AAATCTCTTAAAGAAAGGAGCATCTGTTTTAATGGGTTTTATTACCACTG
CCATATGTTATGGAAAAACGATCATCAGACGAGTTTTCCaaataatttct
tcaaaaagaaCCATATTGCTTTGTATTATCGTTGCTATGGTTGTTATTGC
AACTGGATGGTACTTCAATGATGCCAATGAAATGCAAGTCTTACAAGACG
CCCCAACAATGCCATCAATACCACCTTCATCACCGCCCGTAACTTCCTCG
CCCTCCCCGGAGCAGGAGATACTATTCATGGTTGCATTGCCGTCGTCTTG
TTTATTAATGTTATGGATTTTCACTGTTTACACCGAAATTATCATCCCAA
TGATGACATGTCGCAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042544-exon-sc0003483-1491911889:14820..15375 | TCONS_00042544-exon-sc0003483-1491911889:14820..15375 | Clytia hemisphaerica | exon |
| TCONS_00042544-exon-sc0003483-1510915933:14820..15375 | TCONS_00042544-exon-sc0003483-1510915933:14820..15375 | Clytia hemisphaerica | exon |
| TCONS_00042544-exon-sc0003483-1575043694:14820..15375 | TCONS_00042544-exon-sc0003483-1575043694:14820..15375 | Clytia hemisphaerica | exon |
| TCONS_00042544-exon-sc0003483-1491911889:16102..16379 | TCONS_00042544-exon-sc0003483-1491911889:16102..16379 | Clytia hemisphaerica | exon |
| TCONS_00042544-exon-sc0003483-1510915933:16102..16379 | TCONS_00042544-exon-sc0003483-1510915933:16102..16379 | Clytia hemisphaerica | exon |
| TCONS_00042544-exon-sc0003483-1575043694:16102..16379 | TCONS_00042544-exon-sc0003483-1575043694:16102..16379 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003483 | supercontig | sc0003483:14820..16379 + |
Blast
The following BLAST results are available for this feature:
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