TCONS_00042543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042543
Unique NameTCONS_00042543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042543 ID=TCONS_00042543|Name=TCONS_00042543|organism=Clytia hemisphaerica|type=transcript|length=437bp
TGCTGACGCAATAAAGCACGTATCTCTTCCAATCTTTGAAGAATATTGTT
CAGTTCTGTTAGCGGACAGCCAACTACTTCTACTTCATCAACAATGTCGC
CTACTTCTTCTGACATGAGGATAACTTTGTTCATGACAGATGCCATTGTG
AATAAGCGATTTGACGTTTCCGCTCTGATAGAGTCGATTGAAGAAATCAA
TTGTTCAAGTGATGAAGAATGAGTGTCGAGTGATTGTAAAGTAGTTTCAA
GCGTAAGTTTATTTACCTCAATTGATTTGATAATGGGTCGTAGAGTGATG
TCGTCAAAGTTTAAGTCAGACGGCAATTTATTTGAGTCAGTATATTGTTG
ATGAGATGAATCAAATACAGATTGTTGATGTGGGGGTTGATCGACTACGG
ATCGGAGTTGTGAAGATTGATCAGCTACGGATCGAAG
Run BLAST on NCBI

protein sequence of TCONS_00042543-protein

>TCONS_00042543-protein ID=TCONS_00042543-protein|Name=TCONS_00042543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
LRSVADQSSQLRSVVDQPPHQQSVFDSSHQQYTDSNKLPSDLNFDDITLR
PIIKSIEVNKLTLETTLQSLDTHSSSLEQLISSIDSIRAETSNRLFTMAS
VMNKVILMSEEVGDIVDEVEVVGCPLTELNNILQRLEEIRALLRQ
Run BLAST on NCBI

transcript from alignment at sc0003482:11037..11473

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042543 ID=TCONS_00042543|Name=TCONS_00042543|organism=Clytia hemisphaerica|type=transcript|length=437bp|location=Sequence derived from alignment at sc0003482:11037..11473 (Clytia hemisphaerica)
CTTCGATCCGTAGCTGATCAATCTTCACAACTCCGATCCGTAGTCGATCA
ACCCCCACATCAACAATCTGTATTTGATTCATCTCATCAACAATATACTG
ACTCAAATAAATTGCCGTCTGACTTAAACTTTGACGACATCACTCTACGA
CCCATTATCAAATCAATTGAGGTAAATAAACTTACGCTTGAAACTACTTT
ACAATCACTCGACACTCATTCTTCATCACTTGAACAATTGATTTCTTCAA
TCGACTCTATCAGAGCGGAAACGTCAAATCGCTTATTCACAATGGCATCT
GTCATGAACAAAGTTATCCTCATGTCAGAAGAAGTAGGCGACATTGTTGA
TGAAGTAGAAGTAGTTGGCTGTCCGCTAACAGAACTGAACAATATTCTTC
AAAGATTGGAAGAGATACGTGCTTTATTGCGTCAGCA

Coding sequence (CDS) from alignment at sc0003482:11037..11473

>TCONS_00042543 ID=TCONS_00042543|Name=TCONS_00042543|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0003482:11037..11473 (Clytia hemisphaerica)
CTTCGATCCGTAGCTGATCAATCTTCACAACTCCGATCCGTAGTCGATCA
ACCCCCACATCAACAATCTGTATTTGATTCATCTCATCAACAATATACTG
ACTCAAATAAATTGCCGTCTGACTTAAACTTTGACGACATCACTCTACGA
CCCATTATCAAATCAATTGAGGTAAATAAACTTACGCTTGAAACTACTTT
ACAATCACTCGACACTCATTCTTCATCACTTGAACAATTGATTTCTTCAA
TCGACTCTATCAGAGCGGAAACGTCAAATCGCTTATTCACAATGGCATCT
GTCATGAACAAAGTTATCCTCATGTCAGAAGAAGTAGGCGACATTGTTGA
TGAAGTAGAAGTAGTTGGCTGTCCGCTAACAGAACTGAACAATATTCTTC
AAAGATTGGAAGAGATACGTGCTTTATTGCGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026365XLOC_026365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042543-exon-sc0003482-1491911889:11037..11473TCONS_00042543-exon-sc0003482-1491911889:11037..11473Clytia hemisphaericaexon
TCONS_00042543-exon-sc0003482-1510915933:11037..11473TCONS_00042543-exon-sc0003482-1510915933:11037..11473Clytia hemisphaericaexon
TCONS_00042543-exon-sc0003482-1575043694:11037..11473TCONS_00042543-exon-sc0003482-1575043694:11037..11473Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042543-proteinTCONS_00042543-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003482supercontigsc0003482:11037..11473 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89734	2.67924	2.79283	0.243234	1.88857	1.00413	1.46771	0.838336	0.598652	0.162419	0.157648	0.310894	0.103487	0.107473	0	0.189642	0.609318	0.239456	0.661643	0	0.752235	0.278267	0.418794	0.192513	0.917614	0.149102	0.578194	0.287919	0.243623	1.18619
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top