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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042541 ID=TCONS_00042541|Name=TCONS_00042541|organism=Clytia hemisphaerica|type=transcript|length=411bp
TCCCTGGTAAATCAACTCGGGTTCAATTTCGGGTGTATCAGGTTCACCCG
ACCTTACCtgaaattgctatttttggttaGCGCGCGCCTGCGCACTGAGC
ACTTACCTGAAGAACTCGGGTTATTGGACGATTTTGAGTGGTCCTTCGCg
tctgcaaaaatatttttttcacgaTCCAGAATTTAGagcgcacttttttt
ctttctgcgAGATAGTTCAAGATGGAAGGTCACGTCACTTCGTAATTCAC
ATTTATTTTACAATATACTTTGACAACTGGATGAAGAAAATCGCCTTCAA
TTTTCCAAAGGCAATGACTATGACTggataaagaaaaaaagGTTCAACCG
AAACAAGAGCTAAAATCCAcaaagaattcaaaattgaCAATTCACTCAGA
TTACACTGCAA Run BLAST on NCBI transcript from alignment at sc0003482:1309..4798+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042541 ID=TCONS_00042541|Name=TCONS_00042541|organism=Clytia hemisphaerica|type=transcript|length=3490bp|location=Sequence derived from alignment at sc0003482:1309..4798+ (Clytia hemisphaerica)
TCCCTGGTAAATCAACTCGGGTTCAATTTCGGGTGTATCAGGTTCACCCG
ACCTTACCtgaaattgctatttttggttaGCGCGCGCCTGCGCACTGAGC
ACTTACCTGAAGAACTCGGGTTATTGGACGATTTTGAGTGGTCCTTCGCg
tctgcaaaaatatttttttcacgaTCCAGAATTTAGagcgcacttttttt
ctttctgcgAGATAGTTCAAGATGGAAGGTCACGTCACTTCGTAATTCAC
ATTTATTTTACAATATACTTTGACAACTGGATGAAGAAAATCGCCTTCAA
TTTTCCAAAGGCAATGACTATGACTggataaagaaaaaaaggtatgcttt
tatcattctttattttcttaataaatttgACAGGGCAGGGGAAGTTGGTT
TGATTCATGGTTCTTCTGATCAATCTCTTTTCTCAGCCTCAGAGTGTTCT
TTGAACTTAAGTGCCAAAAATATATCTCAGTTATATTATTTATCTTTGCA
AGTAAGTCGAAAAAGTAATCCCAATAAATTGTTTCCTGGAAATTTTTAAC
CTTTAGtagagctagaatctgagattGTTTGTTTGGGGTGTATCTCACTA
GAGTACTACCACTTCTACTTCAACAACAACAGTCGGAATCCAGCGTGGAA
ATTTGTCTACTATGACTGCTTTTTTGTCCGTACACAGCTGCAtgatttgt
catattttttctGAAGGCCAACCATCCCAAATAGTGCATCTCAGAAATCT
ACAATTCTTCATTGAGGAGtccctttgaatttttttttacaatcacCTAA
ACCAATCACCAATCACCAATTTTACCAACCGGCAACAAataatattctca
acttcagttgagctagaatctgagaatgtctgtcagTATGTCAGTGCAGT
CTGTCAGTCTGTCACCGCTAAACTTTGTTTGGGGCAGTGGGCATGCTGGA
Gtcatcaaaaatggtcggattcggctgaaattttgcacacttgttccttg
ggagccctggttttttttgttttcttttttccttttttcaaatttttgat
ttttaggcgCACGGTCACGAGTTTTAGCTCAAACAAGGCTAAAAGCTTTG
AGGCaggttggagacttcaaaatGGAACGATTTAGCTGAAtctttgcaca
cttgttccttggggtgaatatctgggagcatttttttcattttttcaaaa
tattgagtcTTAGGGGTGTGGTCACGTGTTTTAgtctcaaaacgaggcta
aaaactttgggacaggcttgagacttcaaaaatattccgattcagatgaa
attttgcacactagTTCCTTGGGTGATTATCTGGGGAGCTTTTTTTTCAT
ATCTTCAAAATGTTGACTCTTAGGGGTGTGGTAACgagttttagcctcaa
aacgaggctaaaaaattttggggcaggcttgagacttcaaaaatattccg
attcagctgaaattttgcacacttgttccttgggtgaacaTCTGGGGtag
tttttcatttctttaaattttgattcttaGGGGCGTGGTCATGAGTTTTG
GCCTCAAGACGAGGCTAAAAACTCTGGGGCaggttggagacttcaaaaat
ggtccgatttagctgaaattttgcacacttgttccttgggtgaatacctg
ggagctttttttcatattttcaaaatgttgactCTAAGGGGTGTGGTAAC
gagttttagcctcaaaacaaggctaaaaactttggggcaggcttgagact
tcaaaaatattccGATTCAGctgagattttgcacacttgttccttgggtg
aatatctggggtattttttcatttctttaaattttgattcttaGGGGCGT
GGTCATGAGTTTTACCCTCAAAACAAGGCGGAAAACTTTAAGGCAAGCtc
gagacttcaaaaatgttccGAATTTAGCTGAGTAACagcaaaattctttg
aaacatctgcatttccattttttttagacaggaaacattttttttgggcG
CCATTTATGGCTAATCTTTTCCTTTATCATTTTGAGTCGAAGTGGATCAA
gagcttgaaaaaagaaaatcttcaaaaagccaGACGATTTAGCAACACAT
TTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcgttaagttggtgaaaatga
tttctcgctcagtttgaatgtttttgatttttagtttgacacgcgttttc
tgaattttaattagctttttcagataataaCTAGATTTTCCTTACTTACT
ATGCTTTAGAAACGTCTGAAATTAGGTTGTGGTGTGTCATTCAGGTAgtt
agataattttttttacttatatAGGTTCAAACGGGAATAACTGATAGTTT
TTTGGATAGGTGTAACTCAAGAAAGAGAATCTAATAAAACATGCGTACCC
TGCTTCCCTCACTCAGGAAAGAacaatataaaatgaaaaatatttcttga
tattcattcttttttgacaGGTTCAACCGAAACAAGAGCTAAAATCCAca
aagaattcaaaattgaCAATTCACTCAGATTACACTGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042541-exon-sc0003482-1491911889:1309..1649 | TCONS_00042541-exon-sc0003482-1491911889:1309..1649 | Clytia hemisphaerica | exon |
| TCONS_00042541-exon-sc0003482-1510915933:1309..1649 | TCONS_00042541-exon-sc0003482-1510915933:1309..1649 | Clytia hemisphaerica | exon |
| TCONS_00042541-exon-sc0003482-1575043694:1309..1649 | TCONS_00042541-exon-sc0003482-1575043694:1309..1649 | Clytia hemisphaerica | exon |
| TCONS_00042541-exon-sc0003482-1491911889:4729..4798 | TCONS_00042541-exon-sc0003482-1491911889:4729..4798 | Clytia hemisphaerica | exon |
| TCONS_00042541-exon-sc0003482-1510915933:4729..4798 | TCONS_00042541-exon-sc0003482-1510915933:4729..4798 | Clytia hemisphaerica | exon |
| TCONS_00042541-exon-sc0003482-1575043694:4729..4798 | TCONS_00042541-exon-sc0003482-1575043694:4729..4798 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003482 | supercontig | sc0003482:1309..4798 + |
Blast
The following BLAST results are available for this feature:
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